Upgrade to CUDA 12.4 on Linux as well #34
Workflow file for this run
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| # WARNING: There is a lot of duplication between .yml workflows because I don't know (yet) how | |
| # to factorize these workflows. Keep things in sync. | |
| name: Test building on GitHub Actions | |
| on: | |
| push: | |
| branches: | |
| - test-gha/* | |
| jobs: | |
| make-source-dist: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Install dependencies | |
| run: pip3 install build twine | |
| - name: Get the code | |
| uses: actions/checkout@v4 | |
| - name: Build the source distribution | |
| run: python3 -m build --sdist | |
| - name: Check the source distribution | |
| run: twine check dist/* | |
| - name: Upload the source distribution to GitHub Actions artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: source-dist | |
| path: dist | |
| build-for-linux: | |
| runs-on: ubuntu-20.04 | |
| needs: | |
| - make-source-dist | |
| strategy: | |
| matrix: | |
| python_version: ['3.8', '3.13'] | |
| steps: | |
| - name: Install Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| - name: Install Python packages | |
| run: pip${{ matrix.python_version }} install build auditwheel twine Chrones | |
| - name: Install CUDA | |
| run: | | |
| sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/3bf863cc.pub | |
| sudo add-apt-repository "deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/ /" | |
| sudo apt-get update | |
| sudo apt-get install --yes --no-install-recommends cuda-cudart-dev-12-4 cuda-nvcc-12-4 | |
| echo "/usr/local/cuda-12.4/bin" >>$GITHUB_PATH | |
| - name: Install Boost | |
| run: | | |
| cd /home/runner/work | |
| wget https://boostorg.jfrog.io/artifactory/main/release/1.82.0/source/boost_1_82_0.tar.gz | |
| tar xf boost_*.tar.gz | |
| rm boost_*.tar.gz | |
| cd boost_* | |
| sudo cp -r boost /usr/local/include | |
| - name: Install OR-Tools | |
| run: | | |
| cd /home/runner/work | |
| wget https://github.com/google/or-tools/releases/download/v9.11/or-tools_amd64_ubuntu-20.04_cpp_v9.11.4210.tar.gz | |
| tar xf or-tools_*.tar.gz | |
| rm or-tools_*.tar.gz | |
| cd or-tools_* | |
| sudo cp -r include/* /usr/local/include | |
| sudo cp -r lib/* /usr/local/lib | |
| sudo ldconfig | |
| - name: Install patchelf | |
| run: | | |
| cd /home/runner/work | |
| mkdir patchelf | |
| cd patchelf | |
| wget https://github.com/NixOS/patchelf/releases/download/0.18.0/patchelf-0.18.0-x86_64.tar.gz | |
| tar xf *.tar.gz | |
| sudo cp bin/patchelf /usr/local/bin | |
| - name: Dowload the source distribution from GitHub Actions artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: source-dist | |
| - name: Unzip the source distribution | |
| run: | | |
| tar xf *.tar.gz | |
| rm *.tar.gz | |
| - name: Build the wheel | |
| run: python${{ matrix.python_version }} -m build --wheel --outdir local-dist lincs-* | |
| env: | |
| LINCS_DEV_FORCE_NVCC: "true" | |
| LINCS_DEV_FORCE_CHRONES: "true" | |
| - name: Make the wheel machine-independent | |
| run: auditwheel repair --plat manylinux_2_31_x86_64 --strip local-dist/*.whl --wheel-dir dist | |
| - name: Check the wheel | |
| run: twine check dist/*.whl | |
| - name: Upload the wheel to GitHub Actions artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheel-dist-${{ matrix.python_version }}-linux | |
| path: dist | |
| # build-for-windows: | |
| # runs-on: windows-2022 | |
| # needs: | |
| # - make-source-dist | |
| # strategy: | |
| # matrix: | |
| # python_version: ['3.8'] | |
| # steps: | |
| # - name: Install Python | |
| # uses: actions/setup-python@v5 | |
| # with: | |
| # python-version: ${{ matrix.python_version }} | |
| # - name: Install Python packages | |
| # run: pip install build delvewheel twine | |
| # - name: Install CUDA | |
| # uses: Jimver/[email protected] | |
| # id: cuda-toolkit | |
| # with: | |
| # cuda: '12.4.1' | |
| # use-github-cache: false | |
| # use-local-cache: false | |
| # method: network | |
| # # Package names from https://docs.nvidia.com/cuda/cuda-installation-guide-microsoft-windows/index.html#id2 | |
| # sub-packages: '["nvcc", "cudart"]' | |
| # - name: Install MSys2 | |
| # uses: msys2/setup-msys2@v2 | |
| # with: | |
| # update: true | |
| # msystem: UCRT64 | |
| # install: >- | |
| # gzip | |
| # tar | |
| # unzip | |
| # wget | |
| # - name: Install boost | |
| # shell: msys2 {0} | |
| # run: | | |
| # cd /d/a | |
| # wget https://boostorg.jfrog.io/artifactory/main/release/1.82.0/source/boost_1_82_0.tar.gz | |
| # tar xf boost_*.tar.gz | |
| # rm boost_*.tar.gz | |
| # mv boost_* boost | |
| # cd boost | |
| # mkdir -p /d/lincs-deps/include /d/lincs-deps/lib | |
| # cp -r boost /d/lincs-deps/include | |
| # - name: Install OR-Tools | |
| # shell: msys2 {0} | |
| # run: | | |
| # cd /d/a | |
| # wget https://github.com/google/or-tools/releases/download/v9.11/or-tools_x64_VisualStudio2022_cpp_v9.11.4210.zip | |
| # unzip or-tools_*.zip | |
| # rm or-tools_*.zip | |
| # cd or-tools_* | |
| # cp -r include/* /d/lincs-deps/include | |
| # cp -r lib/* /d/lincs-deps/lib | |
| # - name: Dowload the source distribution from GitHub Actions artifacts | |
| # uses: actions/download-artifact@v4 | |
| # with: | |
| # name: source-dist | |
| # - name: Unzip the source distribution | |
| # shell: msys2 {0} | |
| # run: | | |
| # tar xf *.tar.gz | |
| # rm *.tar.gz | |
| # - name: Build the wheel | |
| # run: python -m build --wheel --outdir local-dist (get-item lincs-*) | |
| # env: | |
| # LINCS_DEV_FORCE_NVCC: "true" | |
| # LINCS_DEV_DEPENDENCIES: d:\lincs-deps | |
| # - name: Make the wheel machine-independent | |
| # run: delvewheel repair --strip (get-item local-dist\*.whl) --wheel-dir dist --add-path d:\lincs-deps\lib | |
| # - name: Check the wheel | |
| # run: twine check (get-item dist\*.whl) | |
| # - name: Upload the wheel to GitHub Actions artifacts | |
| # uses: actions/upload-artifact@v4 | |
| # with: | |
| # name: wheel-dist-${{ matrix.python_version }}-windows | |
| # path: dist | |
| # build-for-macos: | |
| # runs-on: macos-13 | |
| # needs: | |
| # - make-source-dist | |
| # strategy: | |
| # matrix: | |
| # python_version: ['3.8', '3.13'] | |
| # env: | |
| # MACOSX_DEPLOYMENT_TARGET: 12.0 | |
| # steps: | |
| # - name: Install Python | |
| # uses: actions/setup-python@v5 | |
| # with: | |
| # python-version: ${{ matrix.python_version }} | |
| # - name: Install Python packages | |
| # run: pip3 install build delocate twine | |
| # - name: Install OpenMP | |
| # run: | | |
| # cd /Users/runner/work | |
| # mkdir openmp | |
| # cd openmp | |
| # wget https://mac.r-project.org/openmp/openmp-16.0.4-darwin20-Release.tar.gz | |
| # tar xf *.tar.gz | |
| # sudo cp usr/local/lib/* /usr/local/lib | |
| # sudo cp usr/local/include/* /usr/local/include | |
| # - name: Install Boost | |
| # run: | | |
| # cd /Users/runner/work | |
| # wget https://boostorg.jfrog.io/artifactory/main/release/1.82.0/source/boost_1_82_0.tar.gz | |
| # tar xf boost_*.tar.gz | |
| # rm boost_*.tar.gz | |
| # cd boost_* | |
| # sudo cp -r boost /usr/local/include | |
| # - name: Install OR-Tools | |
| # run: | | |
| # cd /Users/runner/work | |
| # wget https://github.com/google/or-tools/releases/download/v9.11/or-tools_x86_64_macOS-14.6.1_cpp_v9.11.4210.tar.gz | |
| # tar xf or-tools_x86_64_*.tar.gz | |
| # rm or-tools_x86_64_*.tar.gz | |
| # wget https://github.com/google/or-tools/releases/download/v9.11/or-tools_arm64_macOS-14.6.1_cpp_v9.11.4210.tar.gz | |
| # tar xf or-tools_arm64_*.tar.gz | |
| # rm or-tools_arm64_*.tar.gz | |
| # sudo cp -r or-tools_arm64_*/include/* /usr/local/include | |
| # lipo or-tools*/lib/libortools.9.11.dylib -output /usr/local/lib/libortools.9.11.dylib -create | |
| # cd /usr/local/lib | |
| # ln -s libortools.9.11.dylib libortools.9.dylib | |
| # ln -s libortools.9.dylib libortools.dylib | |
| # - name: Dowload the source distribution from GitHub Actions artifacts | |
| # uses: actions/download-artifact@v4 | |
| # with: | |
| # name: source-dist | |
| # - name: Unzip the source distribution | |
| # run: | | |
| # tar xf *.tar.gz | |
| # rm *.tar.gz | |
| # - name: Build the wheel | |
| # run: python3 -m build --wheel --outdir local-dist lincs-* | |
| # - name: Make the wheel machine-independent | |
| # run: delocate-wheel --wheel-dir dist local-dist/*.whl | |
| # - name: Check the wheel | |
| # run: twine check dist/*.whl | |
| # - name: Upload the wheel to GitHub Actions artifacts | |
| # uses: actions/upload-artifact@v4 | |
| # with: | |
| # name: wheel-dist-${{ matrix.python_version }}-macos | |
| # path: dist | |
| check: | |
| runs-on: ${{ matrix.os }} | |
| needs: | |
| - build-for-linux | |
| # - build-for-windows | |
| # - build-for-macos | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - ubuntu-20.04 | |
| - ubuntu-22.04 | |
| - ubuntu-24.04 | |
| # - windows-2019 | |
| # - windows-2022 | |
| # - macos-12 | |
| # - macos-13 | |
| # - macos-14 | |
| # - macos-15 | |
| python_version: ['3.8'] | |
| exclude: | |
| # Older Python versions don't build 'universal2' wheels, so they can't run on the M1 runner that run macOS 14 and 15 | |
| - os: macos-14 | |
| python_version: '3.8' | |
| - os: macos-15 | |
| python_version: '3.8' | |
| - os: macos-14 | |
| python_version: '3.9' | |
| - os: macos-15 | |
| python_version: '3.9' | |
| - os: macos-14 | |
| python_version: '3.10' | |
| - os: macos-15 | |
| python_version: '3.10' | |
| steps: | |
| - name: Install Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| # DO NOT install any other dependencies, to test that the wheels are self-contained | |
| - name: Download the wheels from GitHub Actions artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: wheel-dist-${{ matrix.python_version }}-* | |
| merge-multiple: true | |
| - name: Install the wheel | |
| run: pip${{ matrix.python_version }} install --find-links . --pre lincs | |
| - name: Run lincs | |
| run: lincs --help | |
| - run: lincs generate classification-problem 3 2 --output-problem problem.yml | |
| - run: lincs generate classification-model problem.yml --output-model model.yml | |
| - run: lincs generate classified-alternatives problem.yml model.yml 100 --output-alternatives learning-set.csv | |
| - run: lincs learn classification-model problem.yml learning-set.csv --output-model learned-model.yml | |
| - run: lincs classification-accuracy problem.yml learned-model.yml learning-set.csv |