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update algorithm version to release gclobe165 with fix for #69
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silvandeleemput committed Nov 28, 2023
1 parent ada6c05 commit 0e449b8
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5 changes: 2 additions & 3 deletions models/gc_lunglobes/dockerfiles/Dockerfile
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Expand Up @@ -19,9 +19,8 @@ RUN pip3 install --no-cache-dir --force-reinstall SimpleITK==1.2.4
ARG MHUB_MODELS_REPO
RUN buildutils/import_mhub_model.sh gc_lunglobes ${MHUB_MODELS_REPO}

# Install Xie's pulmonary lobe segmentation algorithm and model weights (main branch commit at 2023/09/13)
RUN git clone https://github.com/DIAGNijmegen/bodyct-pulmonary-lobe-segmentation.git src && \
cd src && git reset --hard 5a64b70504d46c042c30851a69cec370f1202e67 && cd /app && \
# Install Xie's pulmonary lobe segmentation algorithm and model weights (release gclobe165 v1.6.5)
RUN git clone --depth 1 --branch v1.6.5 https://github.com/DIAGNijmegen/bodyct-pulmonary-lobe-segmentation.git src && \
sed -i 's/from models import CTSUNet/from src.models import CTSUNet/g' src/test.py

# Default run script
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