segmentation for HALO-20240929a #5
Workflow file for this run
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| name: Compile Segmentation Files | |
| on: | |
| push: | |
| pull_request: | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| jobs: | |
| # Single deploy job since we're just deploying | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: '2.0.4-0' # any version from https://github.com/mamba-org/micromamba-releases | |
| environment-file: environment.yaml | |
| cache-environment: true | |
| post-cleanup: 'all' | |
| - name: install yq | |
| run: "wget -q https://github.com/mikefarah/yq/releases/download/${VERSION}/${BINARY}.tar.gz -O - | tar xz && sudo mv ${BINARY} /usr/bin/yq" | |
| env: | |
| VERSION: v4.44.5 | |
| BINARY: yq_linux_amd64 | |
| - name: install make | |
| run: "sudo apt install -y make" | |
| - name: install IPFS | |
| run: | | |
| wget -q https://dist.ipfs.tech/kubo/${IPFS_VERSION}/kubo_${IPFS_VERSION}_linux-amd64.tar.gz | |
| tar -xvzf kubo_${IPFS_VERSION}_linux-amd64.tar.gz | |
| pushd kubo | |
| sudo bash install.sh | |
| popd | |
| ipfs --version | |
| env: | |
| IPFS_VERSION: v0.32.1 | |
| - name: init IPFS | |
| run: | | |
| ipfs init --profile server,announce-off | |
| - name: configure known IPFS peers | |
| run: | | |
| wget -q https://raw.githubusercontent.com/orcestra-campaign/ipfs_tools/refs/heads/main/scripts/add_peers.py -O - | python - -f https://raw.githubusercontent.com/orcestra-campaign/ipfs_tools/refs/heads/main/known_peers.yaml | |
| shell: micromamba-shell {0} | |
| - name: run IPFS in background | |
| run: | | |
| touch ipfs.log # ensure the file exists such that `tail` doesn't fail. | |
| ipfs daemon 2>ipfs.log | grep -i -o -m1 'Daemon is ready' & tail -f --pid=$! ipfs.log | |
| - name: compile segment files | |
| run: "make -j" | |
| shell: micromamba-shell {0} | |
| - name: Archive build artifacts | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: all_flights | |
| path: | | |
| reports/all_flights.yaml | |
| - name: Archive build artifacts | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: reports | |
| path: | | |
| reports | |
| publish: | |
| needs: build | |
| if: "always() && github.repository_owner == 'orcestra-campaign' && (github.event_name == 'schedule' || (github.event_name == 'push' && github.ref == 'refs/heads/main'))" | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| # Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued. | |
| # However, do NOT cancel in-progress runs as we want to allow these production deployments to complete. | |
| concurrency: | |
| group: "pages" | |
| cancel-in-progress: false | |
| steps: | |
| - name: Download compiled artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: reports | |
| path: reports | |
| - name: Setup Pages | |
| uses: actions/configure-pages@v5 | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: 'reports' | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |