v3.1.0

3.1.0 (2024-05-09)

Features

• Add new stratigraphic column sorters based on contact length and unit relationships fix: transpose dtm for height calculations, export geotiff using gdal (36ddcca)
• added utils function (3c01767)
• Allow for empty dataframes if no filename specified. Mainly for fault and fold files (f81d9b4)
• new ThicknessCalculatorBeta (f703832)
• thickness calculator gamma (6926a45)
• two interpolators for thickness calculations (e118f6a)
• two interpolators for thickness calculators (11f3a04)

Bug Fixes

• 3.12 (264b4c0)
• actually remove the rank & type lines (16801d2)
• add back the project import (01dc0bb)
• add comments to the gamma calculator (936b495)
• Add data files as package_data so that it installs with .py files (09b0cb8)
• add descriptive variable names (672bece)
• Add exception handling around hjson access (#24) (f627f83)
• Add exception handling around hjson access, throw with better message (d8804de)
• add feature to count segnum of polygons with holes (03bcbcc)
• Add layer id to structural data using a spatial join (#38) (09c53d6)
• add lazy function to load files from state name (0e0bfa7)
• add LPF 0.1.0 (a4165b3)
• Add multiple tries to online config file access (8a137ce)
• add option for user defined line length (23aeb06)
• add options/warnings to overwrite existing lpf files (165bc17)
• Add owslib as dependency for testing (0439da8)
• add Pathlib to aus state (e9d7add)
• add remaining thickness fields (130af98)
• add some comments throughout the script and remove unnecessary comments (390b864)
• Add special case for SA config file to lowercase the column names. Also check for empty map2model relationship files and deal appropriately with them (82054df)
• add str and Pathlib to beartypes (16a0247)
• add strike attribute to the class (80e4445)
• add test datafiles to gitignore (951e7fe)
• Add test for featureId (37f5a96)
• add thickness fields to proj and thickness_calculators (f6ec60f)
• added function to find the datasets folder after install. (9623d48)
• Added new stratigraphic sorters, a placeholder for throw calculators and updated thickness calculator (e08e010)
• added option for grid resolution (a0ef130)
• added segNum to geology samples (0ad6983)
• adding beartype to requreiments (4d66b8f)
• adding empty samples to project class (bf100b2)
• adding fault orientation calculation (e35f0b6)
• adding fault orientation calculator (08c9f5e)
• adding fault orientation data type (f0e82e2)
• adding orientation type to fault config. (6359937)
• adding random colour generator (e6315c4)
• adding to_dict for config (968504e)
• adding to_dict for config (968504e)
• adding to_dict for config (258254e)
• adding version and ignoring init file for f401 (db6ac5b)
• adding version attribute (1a2ed67)
• avoid future warnings from geopandas (e877d93)
• can access sampled data for thickness calculations (1ae2d2d)
• change config file name convention for clarity (15123ac)
• change docker to see if documentation builds (10f4fde)
• change make html statement in docs build (26aeba6)
• change segNum to featureId (aab8c8c)
• change segNum to featureId (2689a3a)
• changing boolean comparison (d90df18)
• changing isinstance to issubclass (0e9ecc8)
• Check for empty dataframe before concat (c475513)
• correct typo on actions & reverse test path (a5fbdbc)
• data works without init files on subfolders (cc833bb)
• default fault dip/dipdir to nan (917cee6)
• default fault values to nan not 0 to prevent unexpected behaviours (87863c7)
• Default temp path changed to work in linux (5bd773b)
• Default to not showing file access debug info (fbcf10d)
• delete runtime from repo (36d59bc)
• Dependencies issue with new version of geopandas breaking read_file on remote zip files. Also, fixed errant line that installed the old version of map2model (4eb720a)
• edit path of config filename (6864d7d)
• endpoints have correct length (c36995d)
• fix typo (f69b42f)
• fixed NaN values and NaN warnings (f7cbd78)
• Forgot that env varibles can't have hyphons (c31bb1c)
• formatted using ruff (06ce94d)
• init file recovered (f9f56cc)
• install pytest with gh actions (7b25639)
• Issue with conda build test env not working, skipping (2fffb69)
• letting docs build run on docker (8b4ade0)
• linting (c1bf893)
• linting (4cf51b7)
• make sure Pathlib builds the right path (f10270d)
• minor adds/delete (e479875)
• minor changes to the test for gamma thickness calc (9211826)
• more updates to agree with Pathlib (7a19f34)
• Move clut and config files to _datasets directory and use local files for doc-test case (23e6b8b)
• neat output details (085d4eb)
• new flake8 compliance (6776e25)
• Pass featureId of multi lines to project file, also unpin geopandas (1a4299e)
• Path typo (883b497)
• Remove deprecation ignore warnings and then deprecations (79cd333)
• Remove j in loop as it was not referenced (3314828)
• remove print statement (ecd1e44)
• remove segNum_test (cbd05f2)
• remove this test for now and see if everything else is ok. (16a3b88)
• remove unnecessary else stat (bea7e7a)
• remove unnecessary print statements (58535bf)
• remove unnecessary variable declarations (fb44fef)
• remove unsused variable (fa3e4bb)
• removed float type hint (87713d6)
• removed rank & type from LPF obs tables (750acbd)
• removing commented code (22db166)
• rename in thicknessCalc names in test (fda68e6)
• Rename segNum to featureId (274beca)
• renaming compute to calculate (f5a0ffb)
• replace beta and gamma nomenclature (a9040b0)
• revert hjson back to loop3d version as hjson-py does not work (84b846a)
• revert naming conversion to original (5e7e5ec)
• Reworked dataframe to avoid chained assignment (77b322f)
• ruff linter and docs fix (c7e42a6)
• run ci on all branches but only release from master (9e0f977)
• sampled_contacts are in map_data now (9d57d95)
• setup_grid docstring updated (67b453b)
• simplify output generation; assignment of -1 to uncalculated thickness (6acd2d5)
• simplify the procedure to get the relative path of the library (416d101)
• Still forcing versioning for release-please (08e647b)
• store xyz end points correctly (af29ab6)
• test changing dirs to see if docs build (98098fc)
• testing change tests directory to map2loop folder, because of json file location (371a2a2)
• testing test location again (c775ed9)
• This environment variable has to go somewhere (2495a89)
• Try again setting environment variable for documentation test case (4e6348b)
• try getting colour data, if file doesn't load print warning (dd4f365)
• typo (025de10)
• typo (ea6d0cd)
• Typo fix for config dictionary converter (15b543b)
• typo in calculate (c0ec36b)
• Typo in intrusion flag, ignoring intrusions for contact calculations, remove errant sorter from take_best option (527de6c)
• upd v3.1 (182079b)
• update (thanks RT & LG) (f6f59cf)
• update all to overwrite LPF (d0e38db)
• update aus clut files with documentation links (55bc845)
• update clut file names (c2c020f)
• update code as per Roy's review (450b372)
• update docs dockerfile build (deefe49)
• update for python 3.12 (23c3d76)
• update gh actions to revert to roiginal test location (9b341ad)
• update gitignore (d2df267)
• update LPF dependencies (cbb5489)
• update test to check segnum & geology ID and spatial match (7cbf143)
• update tests to run from upper folder (1a8210d)
• update the rest of the variable names to thicknessMedian except in LPF (2f8816b)
• update the StructuralPoint test (dc7c6da)
• update to new thickness variable name (5f79706)
• update to pathlib in documentation test environment (fd263c2)
• update to solve the Pathlib (5b0ace7)
• update variable names for thicknesscalculator StructPoint (f6a2207)
• updated docstring (93d47bf)
• updated type hint for basal_constacts (c125c63)
• use correct variable rbf (79791f1)
• Use geology sampler for contact sampling (615d19a)
• Use MANIFEST.in to include clut and config files in installation (d49a53f)
• use Nx3 array instead of vector components (ae6739e)
• use shapely.object to avoid clashes (73dd77f)

Documentation

• add 3.11 back on so docs build (LPF needs 3.12 as well) (9f817be)
• add back the .sh to build docs locally (a5ccb0f)
• add docstrings for ThicknessCalculatorGamma (39187f7)
• Add import modules and example parameters to sorter and thickness calculator docs. (3ed1ea7)
• Add import modules and example parameters to sorter and thickness calculator docs. (#33) (b4e6247)
• add m2l verson (c5cf102)
• add space to avoid warning (d615498)
• added thickness to the base class. (e263389)
• adding aylas code template (48c1093)
• adding clut presets to docs (65b23fd)
• adding doc specific requirments (b26d4dd)
• adding docker file (0acf2e4)
• adding documentaion to map2loop (2a30da4)
• adding example for hamersley (3e7688d)
• adding hjson file (1d03505)
• adding m2l template (b2f8ea0)
• adding readme to docs (e43968c)
• adding sphinx (6e9b068)
• adding the remaining classes to docs (c652d84)
• adding user guide (47c8d9b)
• adding user guide for map2loop (57c2263)
• change docker run folder location (54d5969)
• changing map2loop-3 to map2loop (1fe8c40)
• finding the right json path may be the problem (85ddcb3)
• fix channel typo on readme (feee724)
• fix link formatting for Brockman Syncline (0dba31f)
• fix short underline (9ecd5b4)
• fix the path for clut with PathLib too (5c525af)
• Fixed indentation of code block (5be5208)
• fixing path to images (6b311d6)
• geographical --> geological (b368c19)
• ignore files (9de740f)
• keep consistent levels (052de43)
• make sure m2l is updated with local docker build (dc4d8cc)
• making code block work (d0ed967)
• Move examples dir for doc generation (241444f)
• moving images (a800455)
• no need for lavavu (efe4b9d)
• overwrite LPF (62e75b0)
• paths fixed to work with pathlib within docker (5b5b503)
• remove conda channel from dependencies installation (59fe775)
• remove python3.11 bind. m2model updated to 3.12 (5e84484)
• removing LS import for config (bcee039)
• revert back to original (f8d6d2c)
• revert docs to update m2l build locally (e46c45e)
• test to see if python3.11 allows docs to build (map2model requirement) (9d15efd)
• typo (bdbe907)
• update docstring for thickness calc gamma class (bfebedc)
• update hamersley example to not use the legacy (d85ffb9)
• update installation steps for small clarifications (c975f6f)
• update installation steps with channels (76d7897)
• update link (184e522)