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Add support for historical data sorting #4244

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Add support for historical data sorting #4244

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ac9d110
compositeId added for ref_type search parameters.
berkant-k Nov 15, 2023
01baac1
Unittest are failing because of the name pattern. All objects includi…
berkant-k Nov 15, 2023
9c0d444
Add support for historical data sorting
berkant-k Jan 6, 2024
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2 changes: 1 addition & 1 deletion ...utils/src/main/java/org/linuxforhealth/fhir/database/utils/common/DataDefinitionUtil.java
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Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@
* Handles common syntax for generating DDL
*/
public class DataDefinitionUtil {
private static final String NAME_PATTERN_RGX = "[a-zA-Z_][-\\w]*$";
private static final String NAME_PATTERN_RGX = "[a-zA-Z_][\\w]*$";
private static final Pattern NAME_PATTERN = Pattern.compile(NAME_PATTERN_RGX);

/**
Expand Down
7 changes: 4 additions & 3 deletions ...ence-jdbc/src/main/java/org/linuxforhealth/fhir/persistence/jdbc/dao/api/ResourceDAO.java
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Expand Up @@ -11,6 +11,7 @@
import java.util.Map;

import org.linuxforhealth.fhir.database.utils.query.Select;
import org.linuxforhealth.fhir.persistence.HistorySortOrder;
import org.linuxforhealth.fhir.persistence.context.FHIRPersistenceContext;
import org.linuxforhealth.fhir.persistence.exception.FHIRPersistenceDataAccessException;
import org.linuxforhealth.fhir.persistence.exception.FHIRPersistenceException;
Expand Down Expand Up @@ -60,7 +61,7 @@ Resource versionRead(String logicalId, String resourceType, int versionId)
* @throws FHIRPersistenceDataAccessException
* @throws FHIRPersistenceDBConnectException
*/
List<Resource> history(String resourceType, String logicalId, Timestamp fromDateTime, int offset, int maxResults)
List<Resource> history(String resourceType, String logicalId, Timestamp fromDateTime, int offset, int maxResults, HistorySortOrder historySortOrder)
throws FHIRPersistenceDataAccessException, FHIRPersistenceDBConnectException;

/**
Expand Down Expand Up @@ -184,8 +185,8 @@ List<Resource> search(String sqlSelect)
* @throws FHIRPersistenceVersionIdMismatchException
* @throws FHIRPersistenceException
*/
Resource insert(Resource resource, List<ExtractedParameterValue> parameters, String parameterHashB64, ParameterDAO parameterDao,
Integer ifNoneMatch)
Resource insert(Resource resource, List<ExtractedParameterValue> parameters, String parameterHashB64, ParameterDAO parameterDao,
Integer ifNoneMatch)
throws FHIRPersistenceException;

/**
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26 changes: 17 additions & 9 deletions ...jdbc/src/main/java/org/linuxforhealth/fhir/persistence/jdbc/dao/impl/ResourceDAOImpl.java
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Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,7 @@
import org.linuxforhealth.fhir.database.utils.common.CalendarHelper;
import org.linuxforhealth.fhir.database.utils.query.QueryUtil;
import org.linuxforhealth.fhir.database.utils.query.Select;
import org.linuxforhealth.fhir.persistence.HistorySortOrder;
import org.linuxforhealth.fhir.persistence.context.FHIRPersistenceContext;
import org.linuxforhealth.fhir.persistence.exception.FHIRPersistenceDataAccessException;
import org.linuxforhealth.fhir.persistence.exception.FHIRPersistenceException;
Expand Down Expand Up @@ -80,7 +81,7 @@ public abstract class ResourceDAOImpl extends FHIRDbDAOImpl implements ResourceD
"SELECT R.RESOURCE_ID, R.LOGICAL_RESOURCE_ID, R.VERSION_ID, R.LAST_UPDATED, R.IS_DELETED, R.DATA, LR.LOGICAL_ID, R.RESOURCE_PAYLOAD_KEY " +
"FROM %s_RESOURCES R, %s_LOGICAL_RESOURCES LR WHERE " +
"LR.LOGICAL_ID = ? AND R.LOGICAL_RESOURCE_ID = LR.LOGICAL_RESOURCE_ID " +
"ORDER BY R.VERSION_ID DESC ";
"ORDER BY R.VERSION_ID %s ";

// Count the number of versions we have for the resource identified by its logical-id
private static final String SQL_HISTORY_COUNT = "SELECT COUNT(R.VERSION_ID) FROM %s_RESOURCES R, %s_LOGICAL_RESOURCES LR WHERE LR.LOGICAL_ID = ? AND " +
Expand All @@ -90,7 +91,7 @@ public abstract class ResourceDAOImpl extends FHIRDbDAOImpl implements ResourceD
"SELECT R.RESOURCE_ID, R.LOGICAL_RESOURCE_ID, R.VERSION_ID, R.LAST_UPDATED, R.IS_DELETED, R.DATA, LR.LOGICAL_ID, R.RESOURCE_PAYLOAD_KEY " +
"FROM %s_RESOURCES R, %s_LOGICAL_RESOURCES LR WHERE " +
"LR.LOGICAL_ID = ? AND R.LAST_UPDATED >= ? AND R.LOGICAL_RESOURCE_ID = LR.LOGICAL_RESOURCE_ID " +
"ORDER BY R.VERSION_ID DESC ";
"ORDER BY R.VERSION_ID %s ";

private static final String SQL_HISTORY_FROM_DATETIME_COUNT =
"SELECT COUNT(R.VERSION_ID) FROM %s_RESOURCES R, %s_LOGICAL_RESOURCES LR WHERE LR.LOGICAL_ID = ? AND " +
Expand Down Expand Up @@ -147,7 +148,7 @@ public abstract class ResourceDAOImpl extends FHIRDbDAOImpl implements ResourceD
* @param trxSyncRegistry
*/
public ResourceDAOImpl(Connection c, String schemaName, FHIRDbFlavor flavor, TransactionSynchronizationRegistry trxSynchRegistry,
FHIRPersistenceJDBCCache cache, ParameterTransactionDataImpl ptdi) {
FHIRPersistenceJDBCCache cache, ParameterTransactionDataImpl ptdi) {
super(c, schemaName, flavor);
this.runningInTrx = true;
this.trxSynchRegistry = trxSynchRegistry;
Expand Down Expand Up @@ -251,7 +252,7 @@ protected Resource createDTO(ResultSet resultSet, boolean hasResourceTypeId) thr
resource.setVersionId(resultSet.getInt(IDX_VERSION_ID));
resource.setDeleted(resultSet.getString(IDX_IS_DELETED).equals("Y") ? true : false);
resource.setResourcePayloadKey(resultSet.getString(IDX_RESOURCE_PAYLOAD_KEY));

if (hasResourceTypeId) {
resource.setResourceTypeId(resultSet.getInt(IDX_RESOURCE_TYPE_ID));
}
Expand All @@ -266,20 +267,27 @@ protected Resource createDTO(ResultSet resultSet, boolean hasResourceTypeId) thr
}

@Override
public List<Resource> history(String resourceType, String logicalId, Timestamp fromDateTime, int offset, int maxResults) throws FHIRPersistenceDataAccessException, FHIRPersistenceDBConnectException {
public List<Resource> history(String resourceType, String logicalId, Timestamp fromDateTime, int offset, int maxResults, HistorySortOrder sortOrder) throws FHIRPersistenceDataAccessException, FHIRPersistenceDBConnectException {
final String METHODNAME = "history";
log.entering(CLASSNAME, METHODNAME);

List<Resource> resources = null;
String stmtString = null;

try {
final String sortDirection;
if(HistorySortOrder.ASC_LAST_UPDATED.equals(sortOrder)){
sortDirection="Asc";
}else{
sortDirection="Desc";
}

if (fromDateTime != null) {
stmtString = String.format(SQL_HISTORY_FROM_DATETIME, resourceType, resourceType);
stmtString = String.format(SQL_HISTORY_FROM_DATETIME, resourceType, resourceType,sortDirection);
stmtString = stmtString + DERBY_PAGINATION_PARMS;
resources = this.runQuery(stmtString, logicalId, fromDateTime, offset, maxResults);
} else {
stmtString = String.format(SQL_HISTORY, resourceType, resourceType);
stmtString = String.format(SQL_HISTORY, resourceType, resourceType,sortDirection);
stmtString = stmtString + DERBY_PAGINATION_PARMS;
resources = this.runQuery(stmtString, logicalId, offset, maxResults);
}
Expand Down Expand Up @@ -409,7 +417,7 @@ protected Integer getResourceTypeId(String resourceType) throws FHIRPersistenceE
}
// cache miss, so read from the database
resourceTypeId = this.readResourceTypeId(resourceType);

if (resourceTypeId != null) {
cache.getResourceTypeCache().addEntry(resourceType, resourceTypeId);
cache.getResourceTypeNameCache().addEntry(resourceTypeId, resourceType);
Expand Down Expand Up @@ -553,7 +561,7 @@ protected FHIRPersistenceJDBCCache getCache() {
@Override
public int searchCount(Select countQuery) throws FHIRPersistenceDataAccessException, FHIRPersistenceDBConnectException {
return runCountQuery(countQuery);
}
}

@Override
public List<Resource> search(Select select) throws FHIRPersistenceDataAccessException, FHIRPersistenceDBConnectException {
Expand Down
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