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ENH: WIP: Issue Slicer#7179 Curved Planar Reformation
This code is WIP and does not compile! Create vtkMRMLScalarVectorDWIVolumeResampler, a subclass of vtkMRMLAbstractVolumeResampler, so that vtkMRMLApplicationLogic->ResampleVolume() can be used. The compile problems include that vtkMRMLCommandLineModuleNode.h, vtkSlicerCLIModuleLogic.h, and vtkSlicerModuleLogic.h cannot be found from Libs/MRML/Logic. Also, windowed sinc functions do not appear to be accessible from Libs/MRML/Logic, and have been commented out.
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Libs/MRML/Logic/vtkMRMLScalarVectorDWIVolumeResampler.cxx
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,123 @@ | ||
| /*============================================================================== | ||
| Program: 3D Slicer | ||
| Copyright(c) Kitware Inc. | ||
| See COPYRIGHT.txt | ||
| or http://www.slicer.org/copyright/copyright.txt for details. | ||
| Unless required by applicable law or agreed to in writing, software | ||
| distributed under the License is distributed on an "AS IS" BASIS, | ||
| WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| See the License for the specific language governing permissions and | ||
| limitations under the License. | ||
| ==============================================================================*/ | ||
|
|
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| #include "vtkMRMLAbstractVolumeResampler.h" | ||
| #include "vtkMRMLScalarVectorDWIVolumeResampler.h" | ||
| #include "vtkMRMLTransformNode.h" | ||
| #include "vtkMRMLVolumeNode.h" | ||
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| // TODO: Replace these with include files | ||
| class vtkMRMLCommandLineModuleNode; | ||
| class vtkSlicerCLIModuleLogic; | ||
| class vtkSlicerModuleLogic; | ||
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||
| //---------------------------------------------------------------------------- | ||
| void vtkMRMLScalarVectorDWIVolumeResampler::PrintSelf(ostream & os, vtkIndent indent) | ||
| { | ||
| this->Superclass::PrintSelf(os, indent); | ||
| } | ||
|
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| //---------------------------------------------------------------------------- | ||
| bool vtkMRMLScalarVectorDWIVolumeResampler::Resample(vtkMRMLVolumeNode * inputVolume, | ||
| vtkMRMLVolumeNode * outputVolume, | ||
| vtkMRMLTransformNode * resamplingTransform, | ||
| vtkMRMLVolumeNode * referenceVolume, | ||
| int interpolationType, | ||
| int windowedSincFunction, | ||
| const ResamplingParameters & resamplingParameter) | ||
| { | ||
| vtkSlicerCLIModuleLogic* resampleLogic = | ||
| vtkSlicerCLIModuleLogic::SafeDownCast(vtkSlicerModuleLogic::GetModuleLogic("ResampleScalarVectorDWIVolume")); | ||
| if (!resampleLogic) | ||
| { | ||
| vtkErrorMacro("vtkMRMLScalarVectorDWIVolumeResampler: resample logic is not set"); | ||
| return false; | ||
| } | ||
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| // TODO: Which of these? | ||
| # if 0 | ||
| vtkSmartPointer<vtkMRMLCommandLineModuleNode> cmdNode = vtkSmartPointer<vtkMRMLCommandLineModuleNode>::New(); | ||
| resampleLogic->GetMRMLScene()->AddNode(cmdNode); | ||
| #else | ||
| vtkMRMLCommandLineModuleNode* cmdNode = resampleLogic->CreateNodeInScene(); | ||
| if (cmdNode == nullptr) | ||
| { | ||
| vtkErrorMacro("vtkMRMLScalarVectorDWIVolumeResampler: failed to create command line module node"); | ||
| return false; | ||
| } | ||
| #endif | ||
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| // Also look at Modules/Loadable/CropVolume/Logic/vtkSlicerCropVolumeLogic.cxx | ||
| cmdNode->SetParameterAsString("inputVolume", inputVolume->GetID()); | ||
| cmdNode->SetParameterAsString("outputVolume", outputVolume->GetID()); | ||
| cmdNode->SetParameterAsString("transformationFile", resamplingTransform->GetID()); | ||
| cmdNode->SetParameterAsString("referenceVolume", referenceVolume->GetID()); | ||
| switch (interpolationType) | ||
| { | ||
| case vtkMRMLAbstractVolumeResampler::InterpolationTypeNearestNeighbor: | ||
| cmdNode->SetParameterAsString("interpolationType", "nn"); | ||
| break; | ||
| case vtkMRMLAbstractVolumeResampler::InterpolationTypeLinear: | ||
| cmdNode->SetParameterAsString("interpolationType", "linear"); | ||
| break; | ||
| case vtkMRMLAbstractVolumeResampler::InterpolationTypeWindowedSinc: | ||
| cmdNode->SetParameterAsString("interpolationType", "ws"); | ||
| break; | ||
| case vtkMRMLAbstractVolumeResampler::InterpolationTypeBSpline: | ||
| cmdNode->SetParameterAsString("interpolationType", "bs"); | ||
| break; | ||
| default: | ||
| break; | ||
| } | ||
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||
| #if 0 | ||
| // TODO: How do we fix this so that it compiles? | ||
| static const int RADIUS = 3; | ||
| typedef itk::WindowedSincInterpolateImageFunction<InputImageType, RADIUS, itk::Function::HammingWindowFunction<RADIUS> > HammingInterpolatorType; | ||
| typedef itk::WindowedSincInterpolateImageFunction<InputImageType, RADIUS, itk::Function::CosineWindowFunction<RADIUS> > CosineInterpolatorType; | ||
| typedef itk::WindowedSincInterpolateImageFunction<InputImageType, RADIUS, itk::Function::WelchWindowFunction<RADIUS> > WelchInterpolatorType; | ||
| typedef itk::WindowedSincInterpolateImageFunction<InputImageType, RADIUS, itk::Function::LanczosWindowFunction<RADIUS> > LanczosInterpolatorType; | ||
| typedef itk::WindowedSincInterpolateImageFunction<InputImageType, RADIUS, itk::Function::BlackmanWindowFunction<RADIUS> > BlackmanInterpolatorType; | ||
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| switch (windowedSincFunction) | ||
| { | ||
| case WindowedSincFunctionHamming: | ||
| resampleLogic->SetInterpolator(HammingInterpolatorType::New()) | ||
| break; | ||
| case WindowedSincFunctionCosine: | ||
| resampleLogic->SetInterpolator(CosineInterpolatorType::New()) | ||
| break; | ||
| case WindowedSincFunctionWelch: | ||
| resampleLogic->SetInterpolator(WelchInterpolatorType::New()) | ||
| break; | ||
| case WindowedSincFunctionLanczos: | ||
| resampleLogic->SetInterpolator(LanczosInterpolatorType::New()) | ||
| break; | ||
| case WindowedSincFunctionBlackman: | ||
| resampleLogic->SetInterpolator(BlackmanInterpolatorType::New()) | ||
| break; | ||
| default: | ||
| break; | ||
| } | ||
| #endif | ||
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| // TODO: What should we do with resamplingParameter? | ||
|
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| resampleLogic->ApplyAndWait(cmdNode, false); | ||
| resampleLogic->GetMRMLScene()->RemoveNode(cmdNode); | ||
| return true; | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,49 @@ | ||
| /*============================================================================== | ||
| Program: 3D Slicer | ||
| Copyright(c) Kitware Inc. | ||
| See COPYRIGHT.txt | ||
| or http://www.slicer.org/copyright/copyright.txt for details. | ||
| Unless required by applicable law or agreed to in writing, software | ||
| distributed under the License is distributed on an "AS IS" BASIS, | ||
| WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| See the License for the specific language governing permissions and | ||
| limitations under the License. | ||
| ==============================================================================*/ | ||
|
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| #ifndef __vtkMRMLScalarVectorDWIVolumeResampler_h | ||
| #define __vtkMRMLScalarVectorDWIVolumeResampler_h | ||
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| // MRMLLogic includes | ||
| // TODO: If this file gets moved then choose the correct export here and below | ||
| #include "vtkMRMLLogicExport.h" | ||
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| // MRML includes | ||
| #include "vtkMRMLAbstractVolumeResampler.h" | ||
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| class VTK_MRML_LOGIC_EXPORT vtkMRMLScalarVectorDWIVolumeResampler : public vtkMRMLAbstractVolumeResampler | ||
| { | ||
| public: | ||
| vtkTypeMacro(vtkMRMLScalarVectorDWIVolumeResampler, vtkMRMLAbstractVolumeResampler); | ||
| void PrintSelf(ostream & os, vtkIndent indent) override; | ||
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| virtual bool Resample(vtkMRMLVolumeNode * inputVolume, | ||
| vtkMRMLVolumeNode * outputVolume, | ||
| vtkMRMLTransformNode * resamplingTransform, | ||
| vtkMRMLVolumeNode * referenceVolume, | ||
| int interpolationType, | ||
| int windowedSincFunction, | ||
| const vtkMRMLAbstractVolumeResampler::ResamplingParameters & resamplingParameter); | ||
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| protected: | ||
| vtkMRMLScalarVectorDWIVolumeResampler() = default; | ||
| ~vtkMRMLScalarVectorDWIVolumeResampler() override = default; | ||
| vtkMRMLScalarVectorDWIVolumeResampler(const vtkMRMLScalarVectorDWIVolumeResampler &) = delete; | ||
| void operator=(const vtkMRMLScalarVectorDWIVolumeResampler &) = delete; | ||
| }; | ||
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| #endif |