Code

Nf composition#15

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Merged

aw-watson merged 19 commits intoedge_v3LANL-Bioinformatics/EDGEv3:edge_v3from nf_compositionLANL-Bioinformatics/EDGEv3:nf_compositionCopy head branch name to clipboardDec 23, 2024

+892-512

Commits

Commits on Nov 6, 2024

• runAssembly in pipeline

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  79219ec

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Commits on Nov 21, 2024

• host removal testing + cleanup

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  f4abc8e

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Commits on Nov 26, 2024

• tests for runAssembly

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Commits on Dec 9, 2024

• reads to contig restructured as subworkflow. adding nf-test CI

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• fixing JDK version for CI

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• testing Apptainer for CI

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  b11e4dc

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• cleanup

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Commits on Dec 10, 2024

• updated snapshots for JDK 17

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• adding debugging output

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• more testing output for GH actions

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  b110dcb

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• added Git LFS to testing yml

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  49c618e

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• adding sharding to tests - checking to see if this resolves space issues with the runner

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• removing files from LFS

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Commits on Dec 17, 2024

• basic testing for runReadsToContig

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  committed
  46f4aa2

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• adding nf-test file

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  d587915

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• attempting optimized testing requirements

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  497acdd

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• reverting testing strategy

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  c69b0e0

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Commits on Dec 23, 2024

• host removal testing accounts for inconsistent file naming

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  committed
  44f80bf

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• Merge branch 'edge_v3' into nf_composition

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