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  1. HomeologousRegionIdentification HomeologousRegionIdentification Public

    Python 2

  2. MapVCF2NewGenome MapVCF2NewGenome Public

    A pipeline for mapping SNPs in a VCF file to a genome that wasn't used to call the variants. It is expected that this strategy could be used for mapping VCF files to an updated genome assembly or f…

    Python 1

  3. CompareAGP CompareAGP Public

    A script to compare agp files. Outputs all the contigs/scaffolds from the first file and any matching from the second.

    Python 1

  4. OrthologyBetweenSpecies OrthologyBetweenSpecies Public

    A method to identify orthologous and syntenic genes between closely related species.

    Python 1 1

  5. VCFStatistics VCFStatistics Public

    A method for visualizing VCF data on a circos plot (data is generated in a format easy to use with the Circos software)

    Python 1

  6. PrivateAllelePerInd PrivateAllelePerInd Public

    A script to identify the number of private alleles between populations/groups and count the number of private alleles each individual has for that group (useful to identify if paricular individuals…

    Python 1