Potential new test: f-I relationship based on Spoleti et al. 2022 #69
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Based on Fig. 5 of:
Spoleti, E., Krashia, P., La Barbera, L., Nobili, A., Lupascu, C. A., Giacalone, E., ... & D'Amelio, M. (2022). Early derailment of firing properties in CA1 pyramidal cells of the ventral hippocampus in an Alzheimer's disease mouse model. Experimental Neurology, 350, 113969.
Validation Framework Test Entries:
https://model-catalog.brainsimulation.eu/#test_alias.fi_wt_3months
https://model-catalog.brainsimulation.eu/#test_alias.fi_wt_8months
https://model-catalog.brainsimulation.eu/#test_alias.fi_tg_3months
https://model-catalog.brainsimulation.eu/#test_alias.fi_tg_8months
Model Catalog Entry (for model):
https://model-catalog.brainsimulation.eu/#model_alias.ventral_CA1_pyramidal_neuron_ADmice
(see 4 new model instances; ignore first instance)
Sample Notebook:
https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/Shailesh-Testing/testting2_july2022/Tests_VF.ipynb
Comments:
Scoring metric can be given more thought and improved if required.