Skip to content

Issues: KChen-lab/Monopogen

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

49 Open 43 Closed
49 Open 43 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

cellScan error
#96 opened Dec 16, 2024 by tkcaccia
5
germline module merge multiple samples
#95 opened Dec 14, 2024 by tkcaccia
Smart-seq2?
#94 opened Dec 13, 2024 by itslittman
2
Germline analysis
#91 opened Dec 12, 2024 by tkcaccia
1
1000 genome filter
#90 opened Dec 10, 2024 by tkcaccia
1
Error in line 96
#89 opened Dec 9, 2024 by itslittman
1
How to set up the preprocessing part of the chromosome
#86 opened Nov 7, 2024 by qiqi277
4
Error while loading shared libraries: libncurses.so.5 not found
#85 opened Oct 30, 2024 by ttt-404
1
"NA" in putativeSNV.csv$LDrefine_trioLoci_score and LDrefine_merged_score
#84 opened Oct 19, 2024 by Arsenalwins
1
How to run Monopogen gremlin on R2 of 10x fastq
#82 opened Oct 14, 2024 by amirshams84
1
java.lang.OutOfMemoryError when running beagle
#79 opened Oct 8, 2024 by wkdeng
1
Questions about genotype phasing for each SNV in each cell
#75 opened Sep 10, 2024 by Li-Chengyu
2
handling chromosome X
#73 opened Aug 19, 2024 by xiaolinzhu
2
Monopogen treats multiple samples as single sample in germline SNV calling
#72 opened Aug 14, 2024 by yu-tong-wang
3
Number of Called Variants
#70 opened Jul 30, 2024 by keertikoya
1
Incorrect version of beagle when using conda install monopogen
#69 opened Jul 11, 2024 by hima-anbunathan-takara
5
Running monopogen on very large samples
#68 opened Jul 11, 2024 by aidanshoham12
Can i run Monopogen for non-tumor sample?
#67 opened Jul 8, 2024 by ZehangJiang
1
germ line module not detecting full chromosome
#65 opened Jun 23, 2024 by aidanshoham12
3
Somatic Module on multiple chromosomes
#64 opened May 31, 2024 by Arsamat
1
openCRAVAT application
#63 opened May 24, 2024 by ariannadib
2
bam.lst file format
#62 opened May 23, 2024 by aidanshoham12
1
Error during LDrefinement
#61 opened May 21, 2024 by Thapeachydude
@ZiyiWang7
10
Different somatic calls across Monopogen v.1.0 and v1.6.0 help wanted Extra attention is needed
#58 opened May 9, 2024 by ypershad
5
Missing chr20.germline.vcf from germline calling step
#55 opened May 7, 2024 by briansha
8
ProTip! Updated in the last three days: updated:>2024-12-22.