failed to run `@example` block in src/GeneralHazard.md:17-22 ```@example 1 using Distributions using Plots using StatsBase using HazReg ``` exception = ArgumentError: Package Distributions not found in current path. - Run `import Pkg; Pkg.add("Distributions")` to install the Distributions package. Stacktrace: [1] macro expansion @ ./loading.jl:1772 [inlined] [2] macro expansion @ ./lock.jl:267 [inlined] [3] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1753 [4] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [5] invoke_in_world @ ./essentials.jl:923 [inlined] [6] require(into::Module, mod::Symbol) @ Base ./loading.jl:1746 [7] eval @ ./boot.jl:385 [inlined] [8] #58 @ ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:754 [inlined] [9] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [10] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:753 [11] (::IOCapture.var"#5#9"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [12] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [13] with_logger @ ./logging.jl:627 [inlined] [14] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [15] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:752

failed to run `@example` block in src/GeneralHazard.md:28-36 ```@example 1 #= Hazard function =# plot(t -> hazard(LogNormal(0.5, 1), t), xlabel = "x", ylabel = "Hazard", title = "LogNormal distribution", xlims = (0,10), xticks = 0:1:10, label = "", xtickfont = font(16, "Courier"), ytickfont = font(16, "Courier"), xguidefontsize=18, yguidefontsize=18, linewidth=3, linecolor = "blue") ``` exception = UndefVarError: `font` not defined Stacktrace: [1] top-level scope @ GeneralHazard.md:30 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:752

failed to run `@example` block in src/GeneralHazard.md:38-46 ```@example 1 #= Cumulative Hazard function =# plot(t -> cumhazard(LogNormal(0.5, 1),t), xlabel = "x", ylabel = "Cumulative Hazard", title = "LogNormal distribution", xlims = (0,10), xticks = 0:1:10, label = "", xtickfont = font(16, "Courier"), ytickfont = font(16, "Courier"), xguidefontsize=18, yguidefontsize=18, linewidth=3, linecolor = "blue") ``` exception = UndefVarError: `font` not defined Stacktrace: [1] top-level scope @ GeneralHazard.md:40 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:752

failed to run `@example` block in src/GeneralHazard.md:51-59 ```@example 1 #= Hazard function =# plot(t -> hazard(LogLogistic(1, 0.5),t), xlabel = "x", ylabel = "Hazard", title = "LogLogistic distribution", xlims = (0,10), xticks = 0:1:10, label = "", xtickfont = font(16, "Courier"), ytickfont = font(16, "Courier"), xguidefontsize=18, yguidefontsize=18, linewidth=3, linecolor = "blue") ``` exception = UndefVarError: `font` not defined Stacktrace: [1] top-level scope @ GeneralHazard.md:53 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:752

failed to run `@example` block in src/GeneralHazard.md:61-69 ```@example 1 #= Cumulative Hazard function =# plot(t -> cumhazard(LogLogistic(1, 0.5),t), xlabel = "x", ylabel = "Cumulative Hazard", title = "LogLogistic distribution", xlims = (0,10), xticks = 0:1:10, label = "", xtickfont = font(16, "Courier"), ytickfont = font(16, "Courier"), xguidefontsize=18, yguidefontsize=18, linewidth=3, linecolor = "blue") ``` exception = UndefVarError: `font` not defined Stacktrace: [1] top-level scope @ GeneralHazard.md:63 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:752

failed to run `@example` block in src/GeneralHazard.md:73-81 ```@example 1 #= Weibull function =# plot(t -> hazard(Weibull(3, 0.5),t), xlabel = "x", ylabel = "Hazard", title = "Weibull distribution", xlims = (0,10), xticks = 0:1:10, label = "", xtickfont = font(16, "Courier"), ytickfont = font(16, "Courier"), xguidefontsize=18, yguidefontsize=18, linewidth=3, linecolor = "blue") ``` exception = UndefVarError: `font` not defined Stacktrace: [1] top-level scope @ GeneralHazard.md:75 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:752

failed to run `@example` block in src/GeneralHazard.md:83-91 ```@example 1 #= Cumulative Hazard function =# plot(t -> cumhazard(Weibull(3, 0.5),t), xlabel = "x", ylabel = "Cumulative Hazard", title = "Weibull distribution", xlims = (0,10), xticks = 0:1:10, label = "", xtickfont = font(16, "Courier"), ytickfont = font(16, "Courier"), xguidefontsize=18, yguidefontsize=18, linewidth=3, linecolor = "blue") ``` exception = UndefVarError: `font` not defined Stacktrace: [1] top-level scope @ GeneralHazard.md:85 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:752

failed to run `@example` block in src/GeneralHazard.md:96-104 ```@example 1 #= Weibull function =# plot(t -> hazard(Gamma(3, 0.5),t), xlabel = "x", ylabel = "Hazard", title = "Gamma distribution", xlims = (0,10), xticks = 0:1:10, label = "", xtickfont = font(16, "Courier"), ytickfont = font(16, "Courier"), xguidefontsize=18, yguidefontsize=18, linewidth=3, linecolor = "blue") ``` exception = UndefVarError: `font` not defined Stacktrace: [1] top-level scope @ GeneralHazard.md:98 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:752

failed to run `@example` block in src/GeneralHazard.md:106-114 ```@example 1 #= Cumulative Hazard function =# plot(t -> cumhazard(Gamma(3, 0.5),t), xlabel = "x", ylabel = "Cumulative Hazard", title = "Gamma distribution", xlims = (0,10), xticks = 0:1:10, label = "", xtickfont = font(16, "Courier"), ytickfont = font(16, "Courier"), xguidefontsize=18, yguidefontsize=18, linewidth=3, linecolor = "blue") ``` exception = UndefVarError: `font` not defined Stacktrace: [1] top-level scope @ GeneralHazard.md:108 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:752

failed to run `@example` block in src/GeneralHazard.md:191-246 ```@example 1 # Required packages using HazReg using Distributions using Random using DataFrames using Optim # Sample size n = 10000 # Simulated design matrices Random.seed!(123) dist = Normal() des = hcat(rand(dist, n), rand(dist, n)) des_t = rand(dist, n) #---------------------------- # PGW-GH simulation #---------------------------- # True parameters theta0 = [0.1,2.0,5.0] alpha0 = 0.5 beta0 = [-0.5,0.75] # censoring cens = 10 # Data simulation simdat = simGH(seed = 1234, n = n, des = des, des_t = des_t, alpha = alpha0, beta = beta0, hstr = "GH", dist = PowerGeneralizedWeibull(theta0...)) # status variable status = collect(Bool,(simdat .< cens)) # Inducing censoring simdat = min.(simdat, cens) # Model fit OPTPGWGH = GHMLE(init = fill(0.0, 3 + 1 + size(des)[2]), times = simdat, status = status, hstr = "GH", dist = PowerGeneralizedWeibull, des = des, des_t = des_t, method = NelderMead(), maxit = 1000) MLEPGWGH = [exp(OPTPGWGH[1].minimizer[j]) for j in 1:3] append!(MLEPGWGH, OPTPGWGH[1].minimizer[4:end]) # True parameter values vs. MLE COMP = hcat(vcat(theta0,alpha0,beta0),MLEPGWGH); COMP = DataFrame(COMP, :auto); rename!( COMP, ["True", "MLE"] ); println(COMP) ``` exception = ArgumentError: Package HazReg not found in current path. - Run `import Pkg; Pkg.add("HazReg")` to install the HazReg package. Stacktrace: [1] macro expansion @ ./loading.jl:1772 [inlined] [2] macro expansion @ ./lock.jl:267 [inlined] [3] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1753 [4] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [5] invoke_in_world @ ./essentials.jl:923 [inlined] [6] require(into::Module, mod::Symbol) @ Base ./loading.jl:1746 [7] eval @ ./boot.jl:385 [inlined] [8] #58 @ ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:754 [inlined] [9] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [10] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:753 [11] (::IOCapture.var"#5#9"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [12] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [13] with_logger @ ./logging.jl:627 [inlined] [14] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [15] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/qoyeC/src/expander_pipeline.jl:752

Process completed with exit code 1.

Process completed with exit code 1.

Process completed with exit code 1.