New package: CHMMera v0.1.0

[JuliaRegistrator]

• Registering package: CHMMera
• Repository: https://github.com/MurrellGroup/CHMMera.jl
• Created by: @AntonOresten
• Version: v0.1.0
• Commit: c153f2edac461eb455f26e1a8a2e7450c45de9fb
• Reviewed by: @AntonOresten
• Reference: MurrellGroup/CHMMera.jl@c153f2e#commitcomment-149129672

[gdalle]

[noblock]

Hi @MurrellGroup and @AntonOresten, congrats on the new package! Just so you know, I have developed a generic library for HMMs in Julia called HiddenMarkovModels.jl. Not sure it is useful to you but I just thought I'd mention it.

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[AntonOresten]

[noblock]

cc @mchernys

[mchernys]

[noblock]

Thanks @gdalle ! We focused on creating a lightweight application-specific package. The structure of our transition matrix allows our forward/backward/viterbi run in O(N * M) instead of O(N * (M^2)) and we have built in support for handling sequence errors in different ways. It would be possible to implement using HiddenMarkovModels.jl, but I think the amount of overloading we would have to do led us to stay independent.

[gdalle]

[noblock]
Thanks!
Let's continue the discussion in MurrellGroup/CHMMera.jl#3 to avoid polluting the registration process!