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<!doctype html> <html lang=en > <meta charset=UTF-8 > <meta name=viewport content="width=device-width, initial-scale=1"> <link rel=stylesheet href="/css/franklin.css"> <link rel=stylesheet href="/css/basic.css"> <link rel=icon href="/favicon.ico"> <title>JuliaHealth</title> <header> <div class=blog-name ><a href="/">JuliaHealth</a></div> <img src="/assets/julia-health-logo.png" alt="JuliaHealth logo" title="JuliaHealth logo" style="width: 25%; align:center" /> <nav> <ul> <li><a href="/">Home</a> <li><a href="https://github.com/JuliaHealth">GitHub</a> <li><a href="/related-organizations">Related Organizations</a> <li><a href="/meeting-notes">Meeting Notes</a> </ul> <img src="/assets/hamburger.svg" id=menu-icon > </nav> </header> <div class=franklin-content ><h1 id=404_file_not_found ><a href="#404_file_not_found" class=header-anchor >404: File not found</a></h1> <p>The requested file was not found.</p> <p>Please <a href="/">click here</a> to go to the home page.</p> <div class=page-foot > <div class=copyright > © JuliaHealth contributors. Last updated: January 21, 2024. <a id=github href="https://github.com/JuliaHealth/juliahealth.github.io/blob/dev/404.md">Edit this page on GitHub</a>. Website built with <a href="https://github.com/tlienart/Franklin.jl">Franklin.jl</a>. Powered by the <a href="https://julialang.org">Julia programming language</a>. </div> </div> </div> | ||
<!doctype html> <html lang=en > <meta charset=UTF-8 > <meta name=viewport content="width=device-width, initial-scale=1"> <link rel=stylesheet href="/css/franklin.css"> <link rel=stylesheet href="/css/basic.css"> <link rel=icon href="/favicon.ico"> <title>JuliaHealth</title> <header> <div class=blog-name ><a href="/">JuliaHealth</a></div> <img src="/assets/julia-health-logo.png" alt="JuliaHealth logo" title="JuliaHealth logo" style="width: 25%; align:center" /> <nav> <ul> <li><a href="/">Home</a> <li><a href="https://github.com/JuliaHealth">GitHub</a> <li><a href="/related-organizations">Related Organizations</a> <li><a href="/meeting-notes">Meeting Notes</a> </ul> <img src="/assets/hamburger.svg" id=menu-icon > </nav> </header> <div class=franklin-content ><h1 id=404_file_not_found ><a href="#404_file_not_found" class=header-anchor >404: File not found</a></h1> <p>The requested file was not found.</p> <p>Please <a href="/">click here</a> to go to the home page.</p> <div class=page-foot > <div class=copyright > © JuliaHealth contributors. Last updated: January 25, 2024. <a id=github href="https://github.com/JuliaHealth/juliahealth.github.io/blob/dev/404.md">Edit this page on GitHub</a>. Website built with <a href="https://github.com/tlienart/Franklin.jl">Franklin.jl</a>. Powered by the <a href="https://julialang.org">Julia programming language</a>. </div> </div> </div> |
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<!doctype html> <html lang=en > <meta charset=UTF-8 > <meta name=viewport content="width=device-width, initial-scale=1"> <link rel=stylesheet href="/libs/katex/katex.min.css"> <link rel=stylesheet href="/libs/highlight/github.min.css"> <link rel=stylesheet href="/css/franklin.css"> <link rel=stylesheet href="/css/basic.css"> <link rel=icon href="/favicon.ico"> <title>JuliaHealth</title> <header> <div class=blog-name ><a href="/">JuliaHealth</a></div> <img src="/assets/julia-health-logo.png" alt="JuliaHealth logo" title="JuliaHealth logo" style="width: 25%; align:center" /> <nav> <ul> <li><a href="/">Home</a> <li><a href="https://github.com/JuliaHealth">GitHub</a> <li><a href="/related-organizations">Related Organizations</a> <li><a href="/meeting-notes">Meeting Notes</a> </ul> <img src="/assets/hamburger.svg" id=menu-icon > </nav> </header> <div class=franklin-content ><h1 id=juliahealth ><a href="#juliahealth" class=header-anchor >JuliaHealth</a></h1> <p>This is the website for the JuliaHealth organization.</p> <p>We use the Julia programming language to improve medicine, health care, public health, and biomedical research.</p> <p>Visit us on GitHub: <a href="https://github.com/JuliaHealth">https://github.com/JuliaHealth</a></p> <p>Post in the <a href="https://discourse.julialang.org/c/domain/bio/15">Biology, Health, and Medicine category</a> on Discourse.</p> <p>Join us in the <code>#biology-health-and-medicine</code> stream on <a href="https://julialang.zulipchat.com">Zulip</a>.</p> <p>Chat with us in the <code>#health-and-medicine</code> channel on <a href="https://julialang.slack.com">Slack</a>. (Get a Slack invite <a href="https://julialang.org/slack/">here</a>.)</p> <h2 id=juliahealth_packages ><a href="#juliahealth_packages" class=header-anchor >JuliaHealth packages</a></h2> <p>Here is a list of Julia packages in the JuliaHealth organization:</p> <table><tr><th align=right >Package<th align=right >Description<tr><td align=right ><a href="https://github.com/JuliaHealth/ARules.jl">ARules.jl</a><td align=right >Julia package for association rule learning<tr><td align=right ><a href="https://github.com/JuliaHealth/BioMedQuery.jl">BioMedQuery.jl</a><td align=right >Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs)<tr><td align=right ><a href="https://github.com/JuliaHealth/CAOS.jl">CAOS.jl</a><td align=right >Julia implementation of the characteristic attribute organization system (CAOS) algorithm<tr><td align=right ><a href="https://github.com/JuliaHealth/CTakesParser.jl">CTakesParser.jl</a><td align=right >Julia package to parse the output of Apache cTAKES (clinical text analysis and knowledge extraction system)<tr><td align=right ><a href="https://github.com/JuliaHealth/DICOM.jl">DICOM.jl</a><td align=right >Julia package for reading and writing DICOM (Digital Imaging and Communications in Medicine) files<tr><td align=right ><a href="https://github.com/JuliaHealth/DICOMClient.jl">DICOMClient.jl</a><td align=right >Julia client for connecting to DICOM (Digital Imaging and Communications in Medicine) servers by using the DICOMweb RESTful services<tr><td align=right ><a href="https://github.com/JuliaHealth/DICOMTree.jl">DICOMTree.jl</a><td align=right >A small Julia tool for visualizing DICOM metadata.<tr><td align=right ><a href="https://github.com/JuliaHealth/DateShifting.jl">DateShifting.jl</a><td align=right >Reduce re-identification risk while preserving temporal relationships in health data sets<tr><td align=right ><a href="https://github.com/JuliaHealth/DiagnosisClassification.jl">DiagnosisClassification.jl</a><td align=right >Mappings between different systems for classifying diagnoses and problems<tr><td align=right ><a href="https://github.com/JuliaHealth/EHRAuthentication.jl">EHRAuthentication.jl</a><td align=right >Helper code for authenticating to various electronic health record (EHR) systems<tr><td align=right ><a href="https://github.com/JuliaHealth/FHIRClient.jl">FHIRClient.jl</a><td align=right >Julia client for connecting to FHIR (Fast Healthcare Interoperability Resources) servers and building SMART on FHIR applications<tr><td align=right ><a href="https://github.com/JuliaHealth/HealthBase.jl">HealthBase.jl</a><td align=right >Common namespace for functions and interfaces in the JuliaHealth ecosystem<tr><td align=right ><a href="https://github.com/JuliaHealth/HealthSampleData.jl">HealthSampleData.jl</a><td align=right >Sample health data for a variety of health formats and use cases<tr><td align=right ><a href="https://github.com/JuliaHealth/ICD_GEMs.jl">ICD_GEMs.jl</a><td align=right >ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).<tr><td align=right ><a href="https://github.com/JuliaHealth/MTIWrapper.jl">MTIWrapper.jl</a><td align=right >Julia wrapper to the Medical Text Indexer (MTI) application programming interface (API)<tr><td align=right ><a href="https://github.com/JuliaHealth/MedEval3D.jl">MedEval3D.jl</a><td align=right >Set of CUDA accelerated medical segmentation metrics.<tr><td align=right ><a href="https://github.com/JuliaHealth/MedEye3d.jl">MedEye3d.jl</a><td align=right >Julia library for visualization and annotation medical images, specialized particularly for rapid development segmentation of 3 dimensional images like CT or PET/CT scans. Has full support of nuclear medicine Data.<tr><td align=right ><a href="https://github.com/JuliaHealth/MedImage.jl">MedImage.jl</a><td align=right ><tr><td align=right ><a href="https://github.com/JuliaHealth/MedPipe3D.jl">MedPipe3D.jl</a><td align=right ><tr><td align=right ><a href="https://github.com/JuliaHealth/OHDSIAPI.jl">OHDSIAPI.jl</a><td align=right >A Julia interface to a variety of OHDSI web or API-based services<tr><td align=right ><a href="https://github.com/JuliaHealth/OMOPCDMCohortCreator.jl">OMOPCDMCohortCreator.jl</a><td align=right >Create cohorts from databases utilizing the OMOP CDM<tr><td align=right ><a href="https://github.com/JuliaHealth/OMOPCDMDatabaseConnector.jl">OMOPCDMDatabaseConnector.jl</a><td align=right >Utility package to connect to databases in the OMOP CDM format<tr><td align=right ><a href="https://github.com/JuliaHealth/OMOPCommonDataModel.jl">OMOPCommonDataModel.jl</a><td align=right >Pure Julia implementation of the OMOP Common Data Model (CDM)<tr><td align=right ><a href="https://github.com/JuliaHealth/PharmaceuticalClassification.jl">PharmaceuticalClassification.jl</a><td align=right >Mappings between different systems for classifying medications<tr><td align=right ><a href="https://github.com/JuliaHealth/PubChemCrawler.jl">PubChemCrawler.jl</a><td align=right >Utilities to programmatically query the PubChem database<tr><td align=right ><a href="https://github.com/JuliaHealth/PubMedMiner.jl">PubMedMiner.jl</a><td align=right >Julia package for studying co-occurrences in PubMed articles<tr><td align=right ><a href="https://github.com/JuliaHealth/SMARTAppLaunch.jl">SMARTAppLaunch.jl</a><td align=right >Implementation of the SMART App Launch Framework for building SMART on FHIR applications<tr><td align=right ><a href="https://github.com/JuliaHealth/SMARTBackendServices.jl">SMARTBackendServices.jl</a><td align=right >Server-to-server FHIR connections</table> <h2 id=biojulia ><a href="#biojulia" class=header-anchor >BioJulia</a></h2> <p>Our colleagues in the <a href="https://biojulia.net">BioJulia organization</a> use Julia in biology, bioinformatics, and computational biology. Check out their website and visit them on GitHub.</p> <ul> <li><p>Website: <a href="https://biojulia.net">https://biojulia.net</a></p> <li><p>GitHub: <a href="https://github.com/BioJulia">https://github.com/BioJulia</a></p> </ul> <div class=page-foot > <div class=copyright > © JuliaHealth contributors. Last updated: January 21, 2024. <a id=github href="https://github.com/JuliaHealth/juliahealth.github.io/blob/dev/index.md">Edit this page on GitHub</a>. Website built with <a href="https://github.com/tlienart/Franklin.jl">Franklin.jl</a>. Powered by the <a href="https://julialang.org">Julia programming language</a>. </div> </div> </div> | ||
<!doctype html> <html lang=en > <meta charset=UTF-8 > <meta name=viewport content="width=device-width, initial-scale=1"> <link rel=stylesheet href="/libs/katex/katex.min.css"> <link rel=stylesheet href="/libs/highlight/github.min.css"> <link rel=stylesheet href="/css/franklin.css"> <link rel=stylesheet href="/css/basic.css"> <link rel=icon href="/favicon.ico"> <title>JuliaHealth</title> <header> <div class=blog-name ><a href="/">JuliaHealth</a></div> <img src="/assets/julia-health-logo.png" alt="JuliaHealth logo" title="JuliaHealth logo" style="width: 25%; align:center" /> <nav> <ul> <li><a href="/">Home</a> <li><a href="https://github.com/JuliaHealth">GitHub</a> <li><a href="/related-organizations">Related Organizations</a> <li><a href="/meeting-notes">Meeting Notes</a> </ul> <img src="/assets/hamburger.svg" id=menu-icon > </nav> </header> <div class=franklin-content ><h1 id=juliahealth ><a href="#juliahealth" class=header-anchor >JuliaHealth</a></h1> <p>This is the website for the JuliaHealth organization.</p> <p>We use the Julia programming language to improve medicine, health care, public health, and biomedical research.</p> <p>Visit us on GitHub: <a href="https://github.com/JuliaHealth">https://github.com/JuliaHealth</a></p> <p>Post in the <a href="https://discourse.julialang.org/c/domain/bio/15">Biology, Health, and Medicine category</a> on Discourse.</p> <p>Join us in the <code>#biology-health-and-medicine</code> stream on <a href="https://julialang.zulipchat.com">Zulip</a>.</p> <p>Chat with us in the <code>#health-and-medicine</code> channel on <a href="https://julialang.slack.com">Slack</a>. (Get a Slack invite <a href="https://julialang.org/slack/">here</a>.)</p> <h2 id=juliahealth_packages ><a href="#juliahealth_packages" class=header-anchor >JuliaHealth packages</a></h2> <p>Here is a list of Julia packages in the JuliaHealth organization:</p> <table><tr><th align=right >Package<th align=right >Description<tr><td align=right ><a href="https://github.com/JuliaHealth/ARules.jl">ARules.jl</a><td align=right >Julia package for association rule learning<tr><td align=right ><a href="https://github.com/JuliaHealth/BioMedQuery.jl">BioMedQuery.jl</a><td align=right >Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs)<tr><td align=right ><a href="https://github.com/JuliaHealth/CAOS.jl">CAOS.jl</a><td align=right >Julia implementation of the characteristic attribute organization system (CAOS) algorithm<tr><td align=right ><a href="https://github.com/JuliaHealth/CTakesParser.jl">CTakesParser.jl</a><td align=right >Julia package to parse the output of Apache cTAKES (clinical text analysis and knowledge extraction system)<tr><td align=right ><a href="https://github.com/JuliaHealth/DICOM.jl">DICOM.jl</a><td align=right >Julia package for reading and writing DICOM (Digital Imaging and Communications in Medicine) files<tr><td align=right ><a href="https://github.com/JuliaHealth/DICOMClient.jl">DICOMClient.jl</a><td align=right >Julia client for connecting to DICOM (Digital Imaging and Communications in Medicine) servers by using the DICOMweb RESTful services<tr><td align=right ><a href="https://github.com/JuliaHealth/DICOMTree.jl">DICOMTree.jl</a><td align=right >A small Julia tool for visualizing DICOM metadata.<tr><td align=right ><a href="https://github.com/JuliaHealth/DateShifting.jl">DateShifting.jl</a><td align=right >Reduce re-identification risk while preserving temporal relationships in health data sets<tr><td align=right ><a href="https://github.com/JuliaHealth/DiagnosisClassification.jl">DiagnosisClassification.jl</a><td align=right >Mappings between different systems for classifying diagnoses and problems<tr><td align=right ><a href="https://github.com/JuliaHealth/EHRAuthentication.jl">EHRAuthentication.jl</a><td align=right >Helper code for authenticating to various electronic health record (EHR) systems<tr><td align=right ><a href="https://github.com/JuliaHealth/FHIRClient.jl">FHIRClient.jl</a><td align=right >Julia client for connecting to FHIR (Fast Healthcare Interoperability Resources) servers and building SMART on FHIR applications<tr><td align=right ><a href="https://github.com/JuliaHealth/HealthBase.jl">HealthBase.jl</a><td align=right >Common namespace for functions and interfaces in the JuliaHealth ecosystem<tr><td align=right ><a href="https://github.com/JuliaHealth/HealthSampleData.jl">HealthSampleData.jl</a><td align=right >Sample health data for a variety of health formats and use cases<tr><td align=right ><a href="https://github.com/JuliaHealth/ICD_GEMs.jl">ICD_GEMs.jl</a><td align=right >ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).<tr><td align=right ><a href="https://github.com/JuliaHealth/MTIWrapper.jl">MTIWrapper.jl</a><td align=right >Julia wrapper to the Medical Text Indexer (MTI) application programming interface (API)<tr><td align=right ><a href="https://github.com/JuliaHealth/MedEval3D.jl">MedEval3D.jl</a><td align=right >Set of CUDA accelerated medical segmentation metrics.<tr><td align=right ><a href="https://github.com/JuliaHealth/MedEye3d.jl">MedEye3d.jl</a><td align=right >Julia library for visualization and annotation medical images, specialized particularly for rapid development segmentation of 3 dimensional images like CT or PET/CT scans. Has full support of nuclear medicine Data.<tr><td align=right ><a href="https://github.com/JuliaHealth/MedImage.jl">MedImage.jl</a><td align=right ><tr><td align=right ><a href="https://github.com/JuliaHealth/MedPipe3D.jl">MedPipe3D.jl</a><td align=right ><tr><td align=right ><a href="https://github.com/JuliaHealth/OHDSIAPI.jl">OHDSIAPI.jl</a><td align=right >A Julia interface to a variety of OHDSI web or API-based services<tr><td align=right ><a href="https://github.com/JuliaHealth/OMOPCDMCohortCreator.jl">OMOPCDMCohortCreator.jl</a><td align=right >Create cohorts from databases utilizing the OMOP CDM<tr><td align=right ><a href="https://github.com/JuliaHealth/OMOPCDMDatabaseConnector.jl">OMOPCDMDatabaseConnector.jl</a><td align=right >Utility package to connect to databases in the OMOP CDM format<tr><td align=right ><a href="https://github.com/JuliaHealth/OMOPCommonDataModel.jl">OMOPCommonDataModel.jl</a><td align=right >Pure Julia implementation of the OMOP Common Data Model (CDM)<tr><td align=right ><a href="https://github.com/JuliaHealth/PharmaceuticalClassification.jl">PharmaceuticalClassification.jl</a><td align=right >Mappings between different systems for classifying medications<tr><td align=right ><a href="https://github.com/JuliaHealth/PubChemCrawler.jl">PubChemCrawler.jl</a><td align=right >Utilities to programmatically query the PubChem database<tr><td align=right ><a href="https://github.com/JuliaHealth/PubMedMiner.jl">PubMedMiner.jl</a><td align=right >Julia package for studying co-occurrences in PubMed articles<tr><td align=right ><a href="https://github.com/JuliaHealth/SMARTAppLaunch.jl">SMARTAppLaunch.jl</a><td align=right >Implementation of the SMART App Launch Framework for building SMART on FHIR applications<tr><td align=right ><a href="https://github.com/JuliaHealth/SMARTBackendServices.jl">SMARTBackendServices.jl</a><td align=right >Server-to-server FHIR connections</table> <h2 id=biojulia ><a href="#biojulia" class=header-anchor >BioJulia</a></h2> <p>Our colleagues in the <a href="https://biojulia.net">BioJulia organization</a> use Julia in biology, bioinformatics, and computational biology. Check out their website and visit them on GitHub.</p> <ul> <li><p>Website: <a href="https://biojulia.net">https://biojulia.net</a></p> <li><p>GitHub: <a href="https://github.com/BioJulia">https://github.com/BioJulia</a></p> </ul> <div class=page-foot > <div class=copyright > © JuliaHealth contributors. Last updated: January 25, 2024. <a id=github href="https://github.com/JuliaHealth/juliahealth.github.io/blob/dev/index.md">Edit this page on GitHub</a>. Website built with <a href="https://github.com/tlienart/Franklin.jl">Franklin.jl</a>. Powered by the <a href="https://julialang.org">Julia programming language</a>. </div> </div> </div> |
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