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Minor changes towards GPU compatibility #236

Merged
merged 29 commits into from
Mar 31, 2022
Merged

Minor changes towards GPU compatibility #236

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becacaa
return lazy Fill arrays for mean functions from #197
st-- Oct 28, 2021
c42402b
replace Diagonal(Fill(...)) with PDMats.ScalMat
st-- Oct 28, 2021
6cc507f
add tr_Cf_invΣy method for ScalMat & tests
st-- Oct 28, 2021
15143be
_cholesky for ScalMat and remove superfluous _symmetric() calls
st-- Oct 28, 2021
a95cf54
update deprecated call
st-- Oct 28, 2021
553d7ec
Merge branch 'master' into st/gpuprep
st-- Oct 28, 2021
8159deb
standard fallback for ScalMat
st-- Oct 28, 2021
236bdc1
Merge branch 'st/gpuprep' of github.com:JuliaGaussianProcesses/Abstra…
st-- Oct 28, 2021
aec60e2
update Manifests
st-- Oct 29, 2021
feba01e
Merge branch 'master' of github.com:JuliaGaussianProcesses/AbstractGP…
st-- Nov 2, 2021
4f5d112
Merge branch 'master' into st/gpuprep
st-- Nov 3, 2021
3339dce
Merge branch 'st/gpuprep' of github.com:JuliaGaussianProcesses/Abstra…
st-- Mar 30, 2022
48f9b23
Merge branch 'master' of github.com:JuliaGaussianProcesses/AbstractGP…
st-- Mar 30, 2022
30a20b5
revert change that is separated into #239
st-- Mar 30, 2022
694fd36
_symmetric(X::AbstractPDMat) = X
st-- Mar 30, 2022
d41a59b
restrict type parameter
st-- Mar 30, 2022
a0ae96d
restrict further
st-- Mar 30, 2022
03c46a5
Update src/finite_gp_projection.jl
st-- Mar 30, 2022
7127868
compat
st-- Mar 30, 2022
ab2c0a1
compat
st-- Mar 30, 2022
de926ce
Update src/sparse_approximations.jl
st-- Mar 30, 2022
fd075f2
Merge branch 'master' of github.com:JuliaGaussianProcesses/AbstractGP…
st-- Mar 30, 2022
2567571
Merge branch 'st/gpuprep' of github.com:JuliaGaussianProcesses/Abstra…
st-- Mar 30, 2022
569718c
version bump
st-- Mar 30, 2022
3576ab3
fix Manifest
st-- Mar 30, 2022
eeaee74
remove "breaking" change, someone else can handle this elsewhere
st-- Mar 30, 2022
ba04b9d
Merge branch 'master' into st/gpuprep
st-- Mar 30, 2022
9321393
update docs/Manifest
st-- Mar 30, 2022
9568b1a
update Manifests
st-- Mar 31, 2022
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1 change: 1 addition & 0 deletions Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,7 @@ FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b"
IrrationalConstants = "92d709cd-6900-40b7-9082-c6be49f344b6"
KernelFunctions = "ec8451be-7e33-11e9-00cf-bbf324bd1392"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150"
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Show resolved Hide resolved
Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
Expand Down
109 changes: 59 additions & 50 deletions docs/Manifest.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@ uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9"
version = "0.0.1"

[[AbstractGPs]]
deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"]
deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"]
path = ".."
uuid = "99985d1d-32ba-4be9-9821-2ec096f28918"
version = "0.4.0"
version = "0.5.3"

[[ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
Expand All @@ -22,15 +22,15 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"

[[ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "bdc0937269321858ab2a4f288486cb258b9a0af7"
git-tree-sha1 = "3533f5a691e60601fe60c90d8bc47a27aa2907ec"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "1.3.0"
version = "1.11.0"

[[Compat]]
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git-tree-sha1 = "727e463cfebd0c7b999bbf3e9e7e16f254b94193"
git-tree-sha1 = "31d0151f5716b655421d9d75b7fa74cc4e744df2"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "3.34.0"
version = "3.39.0"

[[CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
Expand All @@ -42,9 +42,9 @@ uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b"
version = "0.1.1"

[[DataAPI]]
git-tree-sha1 = "ee400abb2298bd13bfc3df1c412ed228061a2385"
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version = "1.7.0"
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[[DataStructures]]
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Expand All @@ -62,47 +62,46 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"

[[Distances]]
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git-tree-sha1 = "09d9eaef9ef719d2cd5d928a191dc95be2ec8059"
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version = "0.10.5"

[[Distributed]]
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uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[Distributions]]
deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"]
git-tree-sha1 = "3889f646423ce91dd1055a76317e9a1d3a23fff1"
deps = ["ChainRulesCore", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"]
git-tree-sha1 = "d249ebaa67716b39f91cf6052daf073634013c0f"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.11"
version = "0.25.23"

[[DocStringExtensions]]
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git-tree-sha1 = "a32185f5428d3986f47c2ab78b1f216d5e6cc96f"
git-tree-sha1 = "b19534d1895d702889b219c382a6e18010797f0b"
uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.8.5"
version = "0.8.6"

[[Documenter]]
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git-tree-sha1 = "350dced36c11f794c6c4da5dc6493ec894e50c16"
git-tree-sha1 = "f425293f7e0acaf9144de6d731772de156676233"
uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
version = "0.27.5"
version = "0.27.10"

[[Downloads]]
deps = ["ArgTools", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"

[[FillArrays]]
deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
git-tree-sha1 = "7c365bdef6380b29cfc5caaf99688cd7489f9b87"
git-tree-sha1 = "8756f9935b7ccc9064c6eef0bff0ad643df733a3"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "0.12.2"
version = "0.12.7"

[[Functors]]
deps = ["MacroTools"]
git-tree-sha1 = "4cd9e70bf8fce05114598b663ad79dfe9ae432b3"
git-tree-sha1 = "e4768c3b7f597d5a352afa09874d16e3c3f6ead2"
uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196"
version = "0.2.3"
version = "0.2.7"

[[IOCapture]]
deps = ["Logging", "Random"]
Expand All @@ -114,10 +113,16 @@ version = "0.2.2"
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"

[[InverseFunctions]]
deps = ["Test"]
git-tree-sha1 = "f0c6489b12d28fb4c2103073ec7452f3423bd308"
uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
version = "0.1.1"

[[IrrationalConstants]]
git-tree-sha1 = "f76424439413893a832026ca355fe273e93bce94"
git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151"
uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
version = "0.1.0"
version = "0.1.1"

[[JLLWrappers]]
deps = ["Preferences"]
Expand All @@ -133,9 +138,9 @@ version = "0.21.2"

[[KernelFunctions]]
deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "StatsBase", "TensorCore", "Test", "ZygoteRules"]
git-tree-sha1 = "6f46fb7fa868699dfbb6ae7973ba2825d3558ade"
git-tree-sha1 = "9c3d38dafc02feae68a4747813b8b0205fd03da5"
uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392"
version = "0.10.16"
version = "0.10.26"

[[LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
Expand All @@ -161,19 +166,19 @@ deps = ["Libdl"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"

[[LogExpFunctions]]
deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "3d682c07e6dd250ed082f883dc88aee7996bf2cc"
deps = ["ChainRulesCore", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "6193c3815f13ba1b78a51ce391db8be016ae9214"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.0"
version = "0.3.4"

[[Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[MacroTools]]
deps = ["Markdown", "Random"]
git-tree-sha1 = "0fb723cd8c45858c22169b2e42269e53271a6df7"
git-tree-sha1 = "3d3e902b31198a27340d0bf00d6ac452866021cf"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.7"
version = "0.5.9"

[[Markdown]]
deps = ["Base64"]
Expand All @@ -185,9 +190,9 @@ uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"

[[Missings]]
deps = ["DataAPI"]
git-tree-sha1 = "2ca267b08821e86c5ef4376cffed98a46c2cb205"
git-tree-sha1 = "bf210ce90b6c9eed32d25dbcae1ebc565df2687f"
uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
version = "1.0.1"
version = "1.0.2"

[[Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"
Expand All @@ -198,6 +203,10 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
[[NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"

[[OpenLibm_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "05823500-19ac-5b8b-9628-191a04bc5112"

[[OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1"
Expand All @@ -217,9 +226,9 @@ version = "0.11.1"

[[Parsers]]
deps = ["Dates"]
git-tree-sha1 = "438d35d2d95ae2c5e8780b330592b6de8494e779"
git-tree-sha1 = "d911b6a12ba974dabe2291c6d450094a7226b372"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "2.0.3"
version = "2.1.1"

[[Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
Expand All @@ -237,9 +246,9 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"

[[QuadGK]]
deps = ["DataStructures", "LinearAlgebra"]
git-tree-sha1 = "12fbe86da16df6679be7521dfb39fbc861e1dc7b"
git-tree-sha1 = "78aadffb3efd2155af139781b8a8df1ef279ea39"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
version = "2.4.1"
version = "2.4.2"

[[REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
Expand All @@ -255,9 +264,9 @@ uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
version = "1.1.2"

[[Reexport]]
git-tree-sha1 = "5f6c21241f0f655da3952fd60aa18477cf96c220"
git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "1.1.0"
version = "1.2.2"

[[Requires]]
deps = ["UUIDs"]
Expand Down Expand Up @@ -301,10 +310,10 @@ deps = ["LinearAlgebra", "Random"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"

[[SpecialFunctions]]
deps = ["ChainRulesCore", "LogExpFunctions", "OpenSpecFun_jll"]
git-tree-sha1 = "a322a9493e49c5f3a10b50df3aedaf1cdb3244b7"
deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
git-tree-sha1 = "f0bccf98e16759818ffc5d97ac3ebf87eb950150"
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[[Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
Expand All @@ -316,16 +325,16 @@ uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
version = "1.0.0"

[[StatsBase]]
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deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
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[[StatsFuns]]
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[[SuiteSparse]]
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Expand Down Expand Up @@ -362,9 +371,9 @@ uuid = "83775a58-1f1d-513f-b197-d71354ab007a"

[[ZygoteRules]]
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git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0"
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version = "0.2.2"

[[nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
Expand Down
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