fixed errors that were throwing errors for docs

.github/workflows/ci.yml

@@ -5,7 +5,7 @@ jobs:
     runs-on: macos-latest
     strategy:
       matrix:
-        python-version: ["3.9", "3.10"]
+        python-version: ["3.9", "3.10", "3.11"]
     steps:
     - uses: actions/checkout@master
     - name: Set up Python ${{ matrix.python-version }}
@@ -72,7 +72,7 @@ jobs:
       - name: Setup Python
         uses: actions/setup-python@master
         with:
-          python-version: 3.7
+          python-version: 3.9
       - name: Install pipenv
         uses: dschep/install-pipenv-action@v1
       - name: Build docs

Pipfile

@@ -48,4 +48,4 @@ Cython = "==0.29.16"
 Pygments = "==2.7.4"
 
 [requires]
-python_version = "3.7"
+python_version = "3.9"

clipkit/version.py

@@ -1 +1 @@
-__version__ = "2.2.6"
+__version__ = "2.3.0"

docs/Pipfile

@@ -15,4 +15,4 @@ Sphinx = "*"
 sphinx_rtd_theme = "*"
 
 [requires]
-python_version = "3.7"
+python_version = "3.9"

docs/change_log/index.rst

@@ -8,6 +8,9 @@ Change log
 
 Major changes to ClipKIT are summarized here.
 
+**2.3.0**
+Added support for Python version 3.11
+
 **2.2.3**
 Fixed gap character handling. The help message was incongruent
 with what was happening underneath the hood.

requirements.txt

@@ -1,16 +1,15 @@
 appdirs==1.4.3
 attrs==19.3.0
-biopython==1.81
+biopython==1.82
 click==7.1.2
 importlib-metadata==1.6.0
 more-itertools==8.2.0
 numpy==1.24.0
 packaging==20.3
 pathspec==0.8.0
-pluggy==0.13.1
-py==1.8.1
+pluggy==1.5.0
 pyparsing==2.4.7
-pytest==7.2.2
+pytest==8.1.1
 pytest-mock==3.0.0
 regex==2020.5.7
 six==1.14.0

setup.py

@@ -14,10 +14,11 @@
     "Programming Language :: Python",
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
     "Topic :: Scientific/Engineering",
 ]
 
-REQUIRES = ["biopython>=1.81", "numpy>=1.24.0", "cython"]
+REQUIRES = ["biopython>=1.82", "numpy>=1.24.0", "cython"]
 
 setup(
     name="clipkit",