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Support site_positions_to_trim on MSA trim method #217

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Job	Run time
docs	1m 27s
docs	1m 12s
test-full	1m 8s
test-full	1m 0s
test-fast (3.9)	1m 57s
test-fast (3.9)	1m 24s
test-fast (3.10)	1m 14s
test-fast (3.10)	2m 19s
	11m 41s