updates to inflaterIntegrationTest

IntelLabs · Feb 16, 2017 · b690e9f · b690e9f
1 parent fb5d0a2
commit b690e9f
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/build.gradle b/build.gradle
@@ -24,7 +24,7 @@ dependencies {
     compile 'org.broadinstitute:gatk-native-bindings:0.0.3'
     compile 'org.apache.logging.log4j:log4j-api:2.5'
     compile 'org.apache.logging.log4j:log4j-core:2.5'
-    compile 'com.github.samtools:htsjdk:2.8.1-28-g3a8fa8e-SNAPSHOT'
+    compile 'com.github.samtools:htsjdk:2.9.0'
     testCompile 'org.testng:testng:6.9.9'
 }
 

diff --git a/src/test/java/com/intel/gkl/compression/DeflaterIntegrationTest.java b/src/test/java/com/intel/gkl/compression/DeflaterIntegrationTest.java
@@ -59,6 +59,7 @@ public Deflater makeDeflater(final int compressionLevel, final boolean nowrap) {
                 long totalRecords = 0;
                 try (final SamReader reader = readerFactory.open(inputFile)) {
                     final SAMFileHeader header = reader.getFileHeader();
+
                     final SAMFileWriterFactory writerFactory = new SAMFileWriterFactory();
                     writerFactory.setCompressionLevel(compressionLevel);
                     writerFactory.setDeflaterFactory(deflaterFactory);