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@nalcala nalcala released this 09 Jul 14:32
· 15 commits to master since this release
v1.1
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Learn about vigilant mode.

Novelties:

  • allow arbitrarily many fastq files per sample in input_file mode
  • add singularity file (closes issue #20 )
  • change docker base image to something more stable, and rely on conda for installations (closes issue #19 )
  • add parameters for providing multiqc config file and specifying AdapterRemoval options
  • migrate to circleci2
  • add bwa_option_M flag to trigger bwa option -M and the corresponding option in samblaster; default is now to NOT use this option

Other improvements:

  • update conda env, add adapterremoval dependency (closes issue #19 )
  • correct/update help
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