Merge pull request #92 from Hzaatiti/operational-protocol

fix experiment

docs/source/3-experimentdesign/demonstration/2-meg-biopsychology-class-tour.rst

@@ -3,18 +3,18 @@ Biopsychology class MEG demonstration
 
 Place and time: MEG lab in A2-008 at the 29th of November 2024, from 9:15 am to 10:40 am
 
-Agenda 55min
+Agenda 85min
 ------------
 
-.. dropdown:: Lab tour and general equipment presentation `5min`
+.. dropdown:: Lab tour and general equipment presentation `10min`
 
     - MEG overview
     - Explain the dewar, SQUIDs sensors, liquid Helium system
     - Explain the MSR (Magnetically Shielded Room)
     - Show the computers layout and the different capabilities of the lab (eyetracker, vpixx triggers, response box, audio stimulus)
     - Present what experiments we will run on this day and the outline of the demonstration
 
-.. dropdown:: Prepare the participant for an MEG experiment `10min`
+.. dropdown:: Prepare the participant for an MEG experiment `20min`
 
     - Perform laser scan of headhape on the participant
     - Place participant in MSR, explain the headcoils placed on participant head
@@ -31,15 +31,15 @@ Agenda 55min
     - Experiment 1: `Resting state: Access link to code and description <../../3-experimentdesign/experiments/1-exp-resting-state.rst>`_ `5min`
         - Two blocks: a block of 10min eyes open and a second block of 10min eyes closed
     - Experiment 2: `Auditory vs Visual vs Motor: Access link to code and description <../../3-experimentdesign/experiments/9-auditory-vs-visual.rst>`_ `15min`
-        - A random sequence of three types of stimulus: auditory 200 Hz stimulus, visual (white flash), motor (button press)
+        - A random sequence of 150 trials with three types of stimulus (conditions): auditory 200 Hz stimulus, visual (white flash), motor (button press)
 
 
-.. dropdown:: Show and discuss analysis results `15min`
-
-    - Experiment 1: `Resting state: Access link to Analysis Notebook <../../5-pipeline/notebooks/mne/resting_state_pipeline.ipynb>`_
+.. dropdown:: Show and discuss analysis results `20min`
+    - Recap SQUID sensor operation, forward and inverse models, source reconstruction algorithms
+    - Experiment 1 analysis: `Resting state: Access link to Analysis Notebook <../../5-pipeline/notebooks/mne/resting_state_pipeline.ipynb>`_
         - Show higher alpha power in eyes closed than in eyes open in the alpha band (8-12Hz)
         - Show that this difference is better seen in the occipital region
-    - Experiment 2: `Auditory vs Visual experiment <../../5-pipeline/notebooks/fieldtrip/fieldtrip_audio_visual_motor.ipynb>`_
+    - Experiment 2 analysis: `Auditory vs Visual vs Motor experiment <../../5-pipeline/notebooks/fieldtrip/fieldtrip_audio_visual_motor.ipynb>`_
         - Show auditory trials activating the auditory cortex
         - Show visual trials activating the visual cortex
         - Show motor trials activating the motor cortex

docs/source/3-experimentdesign/experiments/9-auditory-vs-visual.rst

@@ -1,13 +1,20 @@
-Experiment example 9: Auditory vs Visual stimulus
--------------------------------------------------
+Experiment example 9: Auditory vs Visual vs Motor stimulus
+----------------------------------------------------------
 
-In this experiment, a random sequence of two stimulus is performed:
-- an auditory stimulus with a 300 Hz audio
+In this experiment, a random sequence of three stimulus is performed:
+- an auditory stimulus with a 200 Hz audio
 - a visual stimulus with a white flash appearing on screen
+- a motor stimulus requiring a button press
+
+Data is stored safely in NYU Box under `audio-visual-motor` file.
+
+`MEG Data Directory <https://nyu.box.com/v/meg-datafiles>`_
 
 Author: Hadi Zaatiti <[email protected]>
 
-.. dropdown:: Photodiode experiment
+
+
+.. dropdown:: Audio vs Visual vs Motor experiment
 
     .. literalinclude:: ../../../../experiments/psychtoolbox/auditory-vs-visual/auditory_vs_visual.m
       :language: matlab