Scripts included:

1. 0.Process_ICGC_toNoWGD.R
   Description: Script for preprocessing data from the ICGC dataset to exclude whole-genome duplication (WGD) cases.

2. 0.Process_TCGA_toNoWGD.R
   Description: Script for preprocessing data from the TCGA dataset to exclude whole-genome duplication (WGD) cases.

3. 1.chr_arm_del_permutation.py
   Description: Python script to perform permutation analysis for chromosome arm deletions across samples.

4. 2.Prevalence_plot_desc.R
   Description: R script to generate descriptive plots of prevalence data related to chromosome arm deletions.