add citation

README.md

@@ -36,6 +36,12 @@ This project follows the [SemVer](https://semver.org/) guidelines for versioning
 
 ## Citations
 
+If you are using `sainsc` for your research please cite
+
+Müller-Bötticher, N., Tiesmeyer, S., Eils, R., and Ishaque, N.
+"Sainsc: a computational tool for segmentation-free analysis of in-situ capture"
+bioRxiv (2024) https://doi.org/10.1101/2024.08.02.603879
+
 ## License
 
 This project is licensed under the MIT License - for details please refer to the

docs/source/index.rst

@@ -10,10 +10,14 @@ It is easily integratable with the `scverse <https://github.com/scverse>`_
 `AnnData <https://anndata.readthedocs.io/>`_ or
 `SpatialData <https://spatialdata.scverse.org/>`_ format.
 
-.. Citations
-.. ---------
+Citations
+---------
 
-.. tbd
+If you are using `sainsc` for your research please cite
+
+Müller-Bötticher, N., Tiesmeyer, S., Eils, R., and Ishaque, N.
+"Sainsc: a computational tool for segmentation-free analysis of in-situ capture"
+bioRxiv (2024) https://doi.org/10.1101/2024.08.02.603879
 
 .. toctree::
    :maxdepth: 1

docs/source/installation.rst

@@ -5,19 +5,17 @@ Installation
 PyPI and ``pip``
 ----------------
 
-``sainsc`` will soon be available to install from `PyPI <https://pypi.org/>`_.
+To install ``sainsc`` from `PyPI <https://pypi.org/>`_ using ``pip`` just run
 
-.. To install ``sainsc`` from `PyPI <https://pypi.org/>`_ using ``pip`` just run
-
-.. .. code-block:: bash
+.. code-block:: bash
 
-..     pip install sainsc
+    pip install sainsc
 
-.. If you want to have support for :py:mod:`spatialdata` use
+If you want to have support for :py:mod:`spatialdata` use
 
-.. .. code-block:: bash
+.. code-block:: bash
 
-..     pip install 'sainsc[spatialdata]'
+    pip install sainsc[spatialdata]
 
 
 Bioconda and ``conda``