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New Tools: OMERO get and OMERO filter using ezomero #61
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…line to add metadat to the dummy set)
@lldelisle what do you think about it? |
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Great additions. Added some suggestions.
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This is great, here are more comments. And I will try the get with my instance because I am not sure I understand what it does.
I am working on a PR to your branch for omero_get |
Please check rmassei#3 |
Fixed the error handling using sys
…dering the header
…he other code style (writing tsv in write mode and error handling)
@bernt-matthias we just need to create the macro for username and password and then we should be trought :) |
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Good to go @rmassei and @lldelisle ?
New tools
Both output are .tsv file with the get/filtered IDs.
Additionally, the cr/ci pipeline was updated to enrich the OMERO dummy set. A tag value is added to an image to test the OMERO filter tool.
UPDATE - omero.get was splitted in 2 tools (rmassei#3):
omero_get_id -> fetch project, dataset, images, annotations, tags, table and ROIs IDs
omero_get_value -> Tool to fetch Annotation, Tag and Tables from IDs.