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Set flags properly for rotated tripolar grids
Added code to tht two versions of clone_MD_to_MD in the FMS1 and FMS2 versions of MOM_domain_infra.F90 to properly change the flags when a tripolar grid is rotated, so that it does not lead to misleadingly incorrect answers. With the current versions of FMS, doing grid rotation testing with a tripolar grid will lead to error messages about the incomplete implementation of FMS, but these failures are preferable to the model silently working incorrectly. All answers are bitwise identical in cases that worked correctly before.
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