Merge pull request #83 from HajimeKawahara/develop

release 0.5.5
HajimeKawahara · Jun 12, 2021 · 67d1b6c · 67d1b6c
2 parents 254c689 + 9471856
commit 67d1b6c
Show file tree

Hide file tree

Showing 43 changed files with 991 additions and 124 deletions.
diff --git a/documents/_build/doctrees/environment.pickle b/documents/_build/doctrees/environment.pickle
diff --git a/documents/_build/doctrees/index.doctree b/documents/_build/doctrees/index.doctree
diff --git a/documents/_build/html/.buildinfo b/documents/_build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: bf2d3cd31b208d9e15a19d0fc21cedfe
+config: 0665ba1405c0067a33433da2fc6024e1
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/documents/_build/html/_sources/index.rst.txt b/documents/_build/html/_sources/index.rst.txt
@@ -12,14 +12,13 @@ ExoJAX
    :maxdepth: 1
 
    userguide/installation.rst
-   userguide/ref.rst
-
+   userguide/ql.rst	     
 
 .. toctree::
    :maxdepth: 1
    :caption: Tutorials:
 
-   tutorials/voigt_function.rst   
+   tutorials/voigt_function.rst
    tutorials/opacity.rst	     
    tutorials/opacity_exomol.rst	     
    tutorials/comparison_db.rst	     
@@ -28,7 +27,10 @@ ExoJAX
    tutorials/forward_modeling.rst	     
    tutorials/reverse_modeling.rst	     
    tutorials/fitbd.rst	     
+   tutorials/optimize_voigt.rst   
+
 
+
 .. toctree::
    :maxdepth: 1
    :caption: User Guide:
@@ -44,6 +46,7 @@ ExoJAX
    :caption: For Developers :
 
    developers/doc.rst   
+   developers/experimental.rst   
 
 Collaborations using exojax is `welcome <http://secondearths.sakura.ne.jp/en/index.html>`_!
 

diff --git a/documents/_build/html/_static/documentation_options.js b/documents/_build/html/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.5.3',
+    VERSION: '0.5.5',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     FILE_SUFFIX: '.html',

diff --git a/documents/_build/html/genindex.html b/documents/_build/html/genindex.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Index &mdash; exojax 0.5.3 documentation</title>
+  <title>Index &mdash; exojax 0.5.5 documentation</title>
 
 
 
@@ -83,12 +83,12 @@
 
 
               <ul>
-<li class="toctree-l1"><a class="reference internal" href="userguide/installation.html">Installation</a></li>
-<li class="toctree-l1"><a class="reference internal" href="userguide/ref.html">References</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/installation.html">Installation and References</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/ql.html">Quick Look for Observers</a></li>
 </ul>
 <p class="caption"><span class="caption-text">Tutorials:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="tutorials/voigt_function.html">Fitting the Voigt Profile</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/voigt_function.html">Fitting a Voigt Profile</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/opacity.html">CO Cross Section using HITRAN</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/opacity_exomol.html">CO Cross Section using ExoMol</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/comparison_db.html">Comparing HITEMP and ExoMol</a></li>
@@ -97,6 +97,7 @@
 <li class="toctree-l1"><a class="reference internal" href="tutorials/forward_modeling.html">Forward Modeling of an Emission Spectrum</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/reverse_modeling.html">Reverse Modeling of an Emission Spectrum</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/fitbd.html">🐱  Bayes Inference of a Real Spectrum of Luhman 16A</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/optimize_voigt.html">Optimization of a Voigt profile</a></li>
 </ul>
 <p class="caption"><span class="caption-text">User Guide:</span></p>
 <ul>
@@ -109,6 +110,7 @@
 <p class="caption"><span class="caption-text">For Developers :</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="developers/doc.html">Generate Documents</a></li>
+<li class="toctree-l1"><a class="reference internal" href="developers/experimental.html">Experimental module</a></li>
 </ul>
 <p class="caption"><span class="caption-text">API:</span></p>
 <ul>
@@ -454,10 +456,10 @@ <h2 id="E">E</h2>
 </li>
       <li><a href="exojax/exojax.spec.html#module-exojax.spec.exomol">exojax.spec.exomol (module)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="exojax/exojax.spec.html#module-exojax.spec.exomolapi">exojax.spec.exomolapi (module)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="exojax/exojax.spec.html#module-exojax.spec.hapi">exojax.spec.hapi (module)</a>
 </li>
       <li><a href="exojax/exojax.spec.html#module-exojax.spec.hitran">exojax.spec.hitran (module)</a>
@@ -481,6 +483,8 @@ <h2 id="E">E</h2>
       <li><a href="exojax/exojax.spec.html#module-exojax.spec.planck">exojax.spec.planck (module)</a>
 </li>
       <li><a href="exojax/exojax.spec.html#module-exojax.spec.response">exojax.spec.response (module)</a>
+</li>
+      <li><a href="exojax/exojax.spec.html#module-exojax.spec.rlpf">exojax.spec.rlpf (module)</a>
 </li>
       <li><a href="exojax/exojax.spec.html#module-exojax.spec.rtcheck">exojax.spec.rtcheck (module)</a>
 </li>
@@ -636,10 +640,18 @@ <h2 id="G">G</h2>
 <h2 id="H">H</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="exojax/exojax.special.html#exojax.special.faddeeva.h_bwd">h_bwd() (in module exojax.special.faddeeva)</a>
+      <li><a href="exojax/exojax.spec.html#exojax.spec.rlpf.h_bwd">h_bwd() (in module exojax.spec.rlpf)</a>
+
+      <ul>
+        <li><a href="exojax/exojax.special.html#exojax.special.faddeeva.h_bwd">(in module exojax.special.faddeeva)</a>
 </li>
-      <li><a href="exojax/exojax.special.html#exojax.special.faddeeva.h_fwd">h_fwd() (in module exojax.special.faddeeva)</a>
+      </ul></li>
+      <li><a href="exojax/exojax.spec.html#exojax.spec.rlpf.h_fwd">h_fwd() (in module exojax.spec.rlpf)</a>
+
+      <ul>
+        <li><a href="exojax/exojax.special.html#exojax.special.faddeeva.h_fwd">(in module exojax.special.faddeeva)</a>
 </li>
+      </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="exojax/exojax.spec.html#exojax.spec.hapi.hcpf">hcpf() (in module exojax.spec.hapi)</a>
@@ -701,7 +713,11 @@ <h2 id="L">L</h2>
       <li><a href="exojax/exojax.spec.html#exojax.spec.hapi.listOfTuples">listOfTuples() (in module exojax.spec.hapi)</a>
 </li>
       <li><a href="exojax/exojax.spec.html#exojax.spec.lpf.ljert">ljert() (in module exojax.spec.lpf)</a>
+
+      <ul>
+        <li><a href="exojax/exojax.spec.html#exojax.spec.rlpf.ljert">(in module exojax.spec.rlpf)</a>
 </li>
+      </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="exojax/exojax.spec.html#exojax.spec.hapi.loadCache">loadCache() (in module exojax.spec.hapi)</a>
@@ -970,14 +986,14 @@ <h2 id="R">R</h2>
 </li>
       <li><a href="exojax/exojax.spec.html#exojax.spec.hapi.REGEX_STRING_FIXCOL">REGEX_STRING_FIXCOL() (in module exojax.spec.hapi)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="exojax/exojax.spec.html#exojax.spec.hapi.renameColumn">renameColumn() (in module exojax.spec.hapi)</a>
 </li>
       <li><a href="exojax/exojax.special.html#exojax.special.faddeeva.rewofz">rewofz() (in module exojax.special.faddeeva)</a>
 </li>
       <li><a href="exojax/exojax.special.html#exojax.special.faddeeva.rewofzs2">rewofzs2() (in module exojax.special.faddeeva)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="exojax/exojax.spec.html#exojax.spec.response.rigidrot">rigidrot() (in module exojax.spec.response)</a>
 </li>
       <li><a href="exojax/exojax.spec.html#exojax.spec.response.rigidrot2">rigidrot2() (in module exojax.spec.response)</a>
@@ -1001,6 +1017,16 @@ <h2 id="R">R</h2>
       <li><a href="exojax/exojax.dynamics.html#exojax.dynamics.rvfunc.rvf2">rvf2() (in module exojax.dynamics.rvfunc)</a>
 </li>
       <li><a href="exojax/exojax.dynamics.html#exojax.dynamics.rvfunc.rvf2c">rvf2c() (in module exojax.dynamics.rvfunc)</a>
+</li>
+      <li><a href="exojax/exojax.spec.html#exojax.spec.rlpf.rvoigt">rvoigt() (in module exojax.spec.rlpf)</a>
+</li>
+      <li><a href="exojax/exojax.spec.html#exojax.spec.rlpf.rvoigtone">rvoigtone() (in module exojax.spec.rlpf)</a>
+</li>
+      <li><a href="exojax/exojax.spec.html#exojax.spec.rlpf.rvvoigt">rvvoigt() (in module exojax.spec.rlpf)</a>
+</li>
+      <li><a href="exojax/exojax.spec.html#exojax.spec.rlpf.rxsmatrix">rxsmatrix() (in module exojax.spec.rlpf)</a>
+</li>
+      <li><a href="exojax/exojax.spec.html#exojax.spec.rlpf.rxsvector">rxsvector() (in module exojax.spec.rlpf)</a>
 </li>
   </ul></td>
 </tr></table>

diff --git a/documents/_build/html/index.html b/documents/_build/html/index.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>ExoJAX &mdash; exojax 0.5.3 documentation</title>
+  <title>ExoJAX &mdash; exojax 0.5.5 documentation</title>
 
 
 
@@ -37,7 +37,7 @@
 
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
-    <link rel="next" title="Installation" href="userguide/installation.html" /> 
+    <link rel="next" title="Installation and References" href="userguide/installation.html" /> 
 </head>
 
 <body class="wy-body-for-nav">
@@ -83,12 +83,12 @@
 
 
               <ul>
-<li class="toctree-l1"><a class="reference internal" href="userguide/installation.html">Installation</a></li>
-<li class="toctree-l1"><a class="reference internal" href="userguide/ref.html">References</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/installation.html">Installation and References</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/ql.html">Quick Look for Observers</a></li>
 </ul>
 <p class="caption"><span class="caption-text">Tutorials:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="tutorials/voigt_function.html">Fitting the Voigt Profile</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/voigt_function.html">Fitting a Voigt Profile</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/opacity.html">CO Cross Section using HITRAN</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/opacity_exomol.html">CO Cross Section using ExoMol</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/comparison_db.html">Comparing HITEMP and ExoMol</a></li>
@@ -97,6 +97,7 @@
 <li class="toctree-l1"><a class="reference internal" href="tutorials/forward_modeling.html">Forward Modeling of an Emission Spectrum</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/reverse_modeling.html">Reverse Modeling of an Emission Spectrum</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/fitbd.html">🐱  Bayes Inference of a Real Spectrum of Luhman 16A</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/optimize_voigt.html">Optimization of a Voigt profile</a></li>
 </ul>
 <p class="caption"><span class="caption-text">User Guide:</span></p>
 <ul>
@@ -109,6 +110,7 @@
 <p class="caption"><span class="caption-text">For Developers :</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="developers/doc.html">Generate Documents</a></li>
+<li class="toctree-l1"><a class="reference internal" href="developers/experimental.html">Experimental module</a></li>
 </ul>
 <p class="caption"><span class="caption-text">API:</span></p>
 <ul>
@@ -183,14 +185,14 @@ <h1>ExoJAX<a class="headerlink" href="#exojax" title="Permalink to this headline
 <p><a class="reference external" href="https://github.com/HajimeKawahara/exojax">ExoJAX</a> provides an auto-differentiable high-resolution spectrum model for exoplanets/brown dwarfs using <a class="reference external" href="https://github.com/google/jax">JAX</a>.</p>
 <div class="toctree-wrapper compound">
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="userguide/installation.html">Installation</a></li>
-<li class="toctree-l1"><a class="reference internal" href="userguide/ref.html">References</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/installation.html">Installation and References</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/ql.html">Quick Look for Observers</a></li>
 </ul>
 </div>
 <div class="toctree-wrapper compound">
 <p class="caption"><span class="caption-text">Tutorials:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="tutorials/voigt_function.html">Fitting the Voigt Profile</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/voigt_function.html">Fitting a Voigt Profile</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/opacity.html">CO Cross Section using HITRAN</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/opacity_exomol.html">CO Cross Section using ExoMol</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/comparison_db.html">Comparing HITEMP and ExoMol</a></li>
@@ -199,6 +201,7 @@ <h1>ExoJAX<a class="headerlink" href="#exojax" title="Permalink to this headline
 <li class="toctree-l1"><a class="reference internal" href="tutorials/forward_modeling.html">Forward Modeling of an Emission Spectrum</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/reverse_modeling.html">Reverse Modeling of an Emission Spectrum</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/fitbd.html">🐱  Bayes Inference of a Real Spectrum of Luhman 16A</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/optimize_voigt.html">Optimization of a Voigt profile</a></li>
 </ul>
 </div>
 <div class="toctree-wrapper compound">
@@ -215,6 +218,7 @@ <h1>ExoJAX<a class="headerlink" href="#exojax" title="Permalink to this headline
 <p class="caption"><span class="caption-text">For Developers :</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="developers/doc.html">Generate Documents</a></li>
+<li class="toctree-l1"><a class="reference internal" href="developers/experimental.html">Experimental module</a></li>
 </ul>
 </div>
 <p>Collaborations using exojax is <a class="reference external" href="http://secondearths.sakura.ne.jp/en/index.html">welcome</a>!</p>
@@ -244,7 +248,7 @@ <h2>License &amp; Attribution<a class="headerlink" href="#license-attribution" t
 
     <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
 
-        <a href="userguide/installation.html" class="btn btn-neutral float-right" title="Installation" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
+        <a href="userguide/installation.html" class="btn btn-neutral float-right" title="Installation and References" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
 
 
     </div>

diff --git a/documents/_build/html/objects.inv b/documents/_build/html/objects.inv
diff --git a/documents/_build/html/py-modindex.html b/documents/_build/html/py-modindex.html
@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Python Module Index &mdash; exojax 0.5.3 documentation</title>
+  <title>Python Module Index &mdash; exojax 0.5.5 documentation</title>
 
 
 
@@ -85,12 +85,12 @@
 
 
               <ul>
-<li class="toctree-l1"><a class="reference internal" href="userguide/installation.html">Installation</a></li>
-<li class="toctree-l1"><a class="reference internal" href="userguide/ref.html">References</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/installation.html">Installation and References</a></li>
+<li class="toctree-l1"><a class="reference internal" href="userguide/ql.html">Quick Look for Observers</a></li>
 </ul>
 <p class="caption"><span class="caption-text">Tutorials:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="tutorials/voigt_function.html">Fitting the Voigt Profile</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/voigt_function.html">Fitting a Voigt Profile</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/opacity.html">CO Cross Section using HITRAN</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/opacity_exomol.html">CO Cross Section using ExoMol</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/comparison_db.html">Comparing HITEMP and ExoMol</a></li>
@@ -99,6 +99,7 @@
 <li class="toctree-l1"><a class="reference internal" href="tutorials/forward_modeling.html">Forward Modeling of an Emission Spectrum</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/reverse_modeling.html">Reverse Modeling of an Emission Spectrum</a></li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials/fitbd.html">🐱  Bayes Inference of a Real Spectrum of Luhman 16A</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/optimize_voigt.html">Optimization of a Voigt profile</a></li>
 </ul>
 <p class="caption"><span class="caption-text">User Guide:</span></p>
 <ul>
@@ -111,6 +112,7 @@
 <p class="caption"><span class="caption-text">For Developers :</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="developers/doc.html">Generate Documents</a></li>
+<li class="toctree-l1"><a class="reference internal" href="developers/experimental.html">Experimental module</a></li>
 </ul>
 <p class="caption"><span class="caption-text">API:</span></p>
 <ul>
@@ -323,6 +325,11 @@ <h1>Python Module Index</h1>
        <td>&#160;&#160;&#160;
        <a href="exojax/exojax.spec.html#module-exojax.spec.response"><code class="xref">exojax.spec.response</code></a></td><td>
        <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="exojax/exojax.spec.html#module-exojax.spec.rlpf"><code class="xref">exojax.spec.rlpf</code></a></td><td>
+       <em></em></td></tr>
      <tr class="cg-1">
        <td></td>
        <td>&#160;&#160;&#160;