Update docs to use Apptainer instead of Singularity #484
Workflow file for this run
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name: tests | |
#Running tests on all branches | |
on: | |
push: | |
pull_request: | |
branches: | |
- main | |
workflow_dispatch: | |
# Needed for micromamba pickup | |
defaults: | |
run: | |
shell: bash -l {0} | |
jobs: | |
test: | |
# Setup the Python that the ROOT binary was built against | |
runs-on: ${{ matrix.os }} | |
# On push events run the CI only on main by default, but run on any branch if the commit message contains '[ci all]' | |
if: >- | |
github.event_name != 'push' | |
|| (github.event_name == 'push' && github.ref == 'refs/heads/main') | |
|| (github.event_name == 'push' && github.ref != 'refs/heads/main' && contains(github.event.head_commit.message, '[ci all]')) | |
strategy: | |
matrix: | |
os: [ubuntu-latest] | |
root-version: ["6.24", "6.26", "6.28"] | |
python-version: ["3.6", "3.7", "3.8", "3.9", "3.10"] | |
exclude: | |
- root-version: "6.24" | |
python-version: "3.10" | |
- root-version: "6.26" | |
python-version: "3.6" | |
- root-version: "6.26" | |
python-version: "3.7" | |
- root-version: "6.28" | |
python-version: "3.6" | |
- root-version: "6.28" | |
python-version: "3.7" | |
include: | |
- os: macos-latest | |
root-version: "6.28" | |
python-version: "3.10" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Setup Micromamba environment | |
uses: mamba-org/provision-with-micromamba@v15 | |
with: | |
environment-file: false | |
environment-name: ci | |
extra-specs: | | |
python=${{ matrix.python-version }} | |
root=${{ matrix.root-version }} | |
imagemagick | |
ghostscript | |
pip | |
channels: conda-forge | |
- name: ROOT info | |
run: | | |
root-config --version | |
root-config --python-version | |
# Install dependencies | |
- name: Install python dependencies | |
run: | | |
python -m pip install --upgrade pip setuptools wheel | |
python -m pip install --upgrade \ | |
'pylint==2.9.6' \ | |
pytest_pylint \ | |
configparser \ | |
astroid \ | |
pyyml \ | |
papermill \ | |
nbconvert \ | |
jupyter \ | |
pytest \ | |
pytest-cov | |
- name: Install hepdata_lib | |
run: python -m pip install '.[test]' | |
# Use python -m pytest to add current working dir as src/ dir layout not used | |
- name: Run pytest | |
run: | | |
python -m pytest tests | |
- name: Report coverage with Codecov | |
uses: codecov/codecov-action@v3 | |
with: | |
files: ./coverage.xml | |
flags: unittests-${{ matrix.python-version }} | |
- name: Save notebooks | |
if: ${{ always() }} | |
run: | | |
python -m jupyter kernelspec list | |
python -m jupyter nbconvert --ExecutePreprocessor.timeout=600 --ExecutePreprocessor.allow_errors=True --to html --execute examples/*.ipynb | |
- name: Upload notebooks | |
if: ${{ always() }} | |
uses: actions/upload-artifact@v3 | |
with: | |
name: notebooks py3 | |
path: examples/*.html | |
- name: Run pylint | |
if: ${{ always() }} | |
run: | | |
python -m pylint hepdata_lib/*.py | |
python -m pylint tests/*.py --rcfile=tests/pylintrc |