Update the VOL for HDF5 2.0.0 changes. #568
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| name: Ubuntu with OpenMPI | |
| on: | |
| push: | |
| branches: [ master, dev ] | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'docs/*' | |
| - 'case_studies/*' | |
| pull_request: | |
| branches: [ master, dev ] | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'docs/*' | |
| - 'case_studies/*' | |
| env: | |
| NETCDF_VERSION: 4.9.2 | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Set up dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install automake autoconf libtool libtool-bin m4 uuid-dev | |
| # zlib | |
| sudo apt-get install zlib1g-dev | |
| # mpi | |
| sudo apt-get install openmpi-bin openmpi-common libopenmpi-dev libgtk2.0-dev | |
| echo "---- location of OpenMPI C compiler ----" | |
| which mpicc | |
| - name: Install HDF5 | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| echo "Install HDF5 on ${GITHUB_WORKSPACE}/HDF5" | |
| rm -rf HDF5 ; mkdir HDF5 ; cd HDF5 | |
| wget -cq https://github.com/HDFGroup/hdf5/releases/latest/download/hdf5.tar.gz | |
| tar -zxf hdf5.tar.gz | |
| cd hdf5-* | |
| ./configure --prefix=${GITHUB_WORKSPACE}/HDF5 \ | |
| --silent \ | |
| --enable-parallel \ | |
| --enable-build-mode=production \ | |
| --enable-unsupported \ | |
| --enable-threadsafe \ | |
| --disable-doxygen-doc \ | |
| --disable-doxygen-man \ | |
| --disable-doxygen-html \ | |
| --disable-tests \ | |
| --disable-fortran \ | |
| --disable-cxx \ | |
| CC=mpicc | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 4 install > qout 2>&1 | |
| make -s -j 4 distclean >> qout 2>&1 | |
| - name: Dump config.log if HDF5 fails to build | |
| if: ${{ failure() }} | |
| run: | | |
| cat ${GITHUB_WORKSPACE}/HDF5/hdf5-${HDF5_VERSION}/config.log | |
| - name: Install NetCDF | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| echo "Install NetCDF-C on ${GITHUB_WORKSPACE}/NetCDF" | |
| rm -rf NetCDF ; mkdir NetCDF ; cd NetCDF | |
| wget -cq https://github.com/Unidata/netcdf-c/archive/refs/tags/v${NETCDF_VERSION}.tar.gz | |
| tar -zxf v${NETCDF_VERSION}.tar.gz | |
| cd netcdf-c-${NETCDF_VERSION} | |
| ./configure --prefix=${GITHUB_WORKSPACE}/NetCDF \ | |
| --silent \ | |
| --disable-dap \ | |
| --disable-nczarr \ | |
| --disable-nczarr-filters \ | |
| --disable-filter-testing \ | |
| --disable-byterange \ | |
| --disable-shared \ | |
| CC=mpicc \ | |
| CPPFLAGS="-I${GITHUB_WORKSPACE}/HDF5/include" \ | |
| LDFLAGS="-L${GITHUB_WORKSPACE}/HDF5/lib" \ | |
| LIBS="-lhdf5" | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 4 install > qout 2>&1 | |
| make -s -j 4 distclean >> qout 2>&1 | |
| - name: Dump config.log if NetCDF4 fails to build | |
| if: ${{ failure() }} | |
| run: | | |
| cat ${GITHUB_WORKSPACE}/NetCDF/netcdf-c-${NETCDF_VERSION}/config.log | |
| - name: Configure Log VOL connector | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| autoreconf -i | |
| ./configure --with-hdf5=${GITHUB_WORKSPACE}/HDF5 \ | |
| --enable-test-netcdf4=${GITHUB_WORKSPACE}/NetCDF \ | |
| --enable-test-hdf5-iotest \ | |
| TESTMPIRUN="mpiexec --oversubscribe -n NP" | |
| # Do NOT test QMCPACK, as it requires FFTW which fails to build | |
| - name: Print config.log if error | |
| if: ${{ failure() }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| cat config.log | |
| - name: Build Log VOL connector | |
| if: ${{ success() }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make -j 4 | |
| # Do NOT parallel build, cmake for external tests can fail | |
| make tests | |
| - name: Serial-run test - make check | |
| if: ${{ success() }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make check | |
| - name: Print test log files | |
| if: ${{ always() }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| fname=`find tests utils examples -type f -name "*.log"` | |
| for f in $fname ; do \ | |
| bname=`basename $f` ; \ | |
| if test "x$bname" != xconfig.log ; then \ | |
| echo "-------- dump $f ----------------------------" ; \ | |
| cat $f ; \ | |
| fi ; \ | |
| done | |
| - name: Parallel-run test - make ptest | |
| if: ${{ success() }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make ptest | |
| - name: Test distribution - make distcheck | |
| if: ${{ success() }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make -j4 -s V=1 LIBTOOLFLAGS=--silent distcheck DISTCHECK_CONFIGURE_FLAGS="--silent --with-hdf5=${GITHUB_WORKSPACE}/HDF5" | |
| - name: make distclean | |
| if: ${{ always() }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make -s distclean | |