fixed cmake builds, update doxygne

CMakeLists.txt

@@ -1088,6 +1088,9 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for
       # Check if MPI-3 Fortran 2008 module mpi_f08 is supported
       if (MPI_Fortran_HAVE_F08_MODULE)
         set (H5_HAVE_MPI_F08 1)
+        message (VERBOSE "MPI-3 Fortran 2008 module mpi_f08 is supported")
+      else ()
+        message (VERBOSE "MPI-3 Fortran 2008 module mpi_f08 is NOT supported")
       endif ()
     endif ()
 

configure.ac

@@ -13,7 +13,7 @@
 ## ----------------------------------------------------------------------
 ## Initialize configure.
 ##
-AC_PREREQ([2.69])
+AC_PREREQ([2.71])
 
 ## AC_INIT takes the name of the package, the version number, and an
 ## email address to report bugs. AC_CONFIG_SRCDIR takes a unique file

fortran/src/CMakeLists.txt

@@ -24,6 +24,13 @@ if (WIN32)
   endif ()
 endif ()
 
+if (H5_HAVE_MPI_F08) # MPI-3 module mpi_f08 supported
+  set (CMAKE_H5_HAVE_MPI_F08 1)
+else ()
+  set (H5_NOMPI_F08 ";")
+  set (CMAKE_H5_HAVE_MPI_F08 0)
+endif ()
+
 # configure for Fortran preprocessor
 
 # Define Parallel variable for passing to H5config_f.inc.cmake

fortran/src/H5Pff.F90

@@ -5288,7 +5288,6 @@ END SUBROUTINE h5pget_fapl_mpio_f
 !! See C API: @ref H5Pget_fapl_mpio()
 !!
 SUBROUTINE h5pget_fapl_mpio_f(prp_id, comm, info, hdferr)
-  USE mpi_f08
   IMPLICIT NONE
   INTEGER(HID_T), INTENT(IN)  :: prp_id
   TYPE(MPI_COMM), INTENT(OUT) :: comm
@@ -5529,18 +5528,50 @@ END FUNCTION H5Pget_mpio_no_collective_cause
 
    END SUBROUTINE h5pget_mpio_no_collective_cause_f
 
+#ifdef H5_DOXYGEN
 !>
 !! \ingroup FH5P
 !!
-!! \brief Set the MPI communicator and info.
+!! \brief Set the MPI communicator and information.
 !!
 !! \param prp_id File access property list identifier.
-!! \param comm   The MPI communicator.
-!! \param info   The MPI info object.
+!! \param comm   MPI-2 communicator.
+!! \param info   MPI-2 info object.
 !! \param hdferr \fortran_error
 !!
 !! See C API: @ref H5Pset_mpi_params()
 !!
+  SUBROUTINE H5Pset_mpi_params_f(prp_id, comm, info, hdferr)
+    IMPLICIT NONE
+    INTEGER(HID_T), INTENT(IN)  :: prp_id
+    INTEGER       , INTENT(IN)  :: comm
+    INTEGER       , INTENT(IN)  :: info
+    INTEGER       , INTENT(OUT) :: hdferr
+  END SUBROUTINE H5Pset_mpi_params_f
+!>
+!! \ingroup FH5P
+!!
+!! \brief Set the MPI communicator and information.
+!!
+!! \note Supports MPI Fortran module mpi_f08
+!!
+!! \param prp_id File access property list identifier.
+!! \param comm   MPI-3 communicator.
+!! \param info   MPI-3 info object.
+!! \param hdferr \fortran_error
+!!
+!! See C API: @ref H5Pset_mpi_params()
+!!
+  SUBROUTINE H5Pset_mpi_params_f(prp_id, comm, info, hdferr)
+    IMPLICIT NONE
+    INTEGER(HID_T), INTENT(IN)  :: prp_id
+    TYPE(MPI_COMM), INTENT(IN)  :: comm
+    TYPE(MPI_INFO), INTENT(IN)  :: info
+    INTEGER       , INTENT(OUT) :: hdferr
+  END SUBROUTINE H5Pset_mpi_params_f
+
+#else
+
   SUBROUTINE H5Pset_mpi_params_f90(prp_id, comm, info, hdferr)
     IMPLICIT NONE
     INTEGER(HID_T), INTENT(IN)  :: prp_id
@@ -5587,18 +5618,55 @@ END FUNCTION H5Pset_mpi_params
 
   END SUBROUTINE H5Pset_mpi_params_f08
 #endif
+
+#endif
+
+#ifdef H5_DOXYGEN
 !>
 !! \ingroup FH5P
 !!
 !! \brief Get the MPI communicator and info.
 !!
 !! \param prp_id File access property list identifier.
-!! \param comm   The MPI communicator.
-!! \param info   The MPI info object.
+!! \param comm   MPI-2 communicator.
+!! \param info   MPI-2 info object.
+!! \param hdferr \fortran_error
+!!
+!! See C API: @ref H5Pget_mpi_params()
+!!
+  SUBROUTINE H5Pget_mpi_params_f(prp_id, comm, info, hdferr)
+    IMPLICIT NONE
+    INTEGER(HID_T), INTENT(IN)  :: prp_id
+    INTEGER       , INTENT(OUT) :: comm
+    INTEGER       , INTENT(OUT) :: info
+    INTEGER       , INTENT(OUT) :: hdferr
+  END SUBROUTINE H5Pget_mpi_params_f
+!>
+!! \ingroup FH5P
+!!
+!! \brief Get the MPI communicator and information.
+!!
+!! \note Supports MPI Fortran module mpi_f08
+!!
+!! \param prp_id File access property list identifier.
+!! \param comm   MPI-3 communicator.
+!! \param info   MPI-3 info object.
 !! \param hdferr \fortran_error
 !!
+!! \attention It is the responsibility of the application to free the MPI objects.
+!!
 !! See C API: @ref H5Pget_mpi_params()
 !!
+  SUBROUTINE H5Pget_mpi_params_f(prp_id, comm, info, hdferr)
+    IMPLICIT NONE
+    INTEGER(HID_T), INTENT(IN)  :: prp_id
+    TYPE(MPI_COMM), INTENT(OUT) :: comm
+    TYPE(MPI_INFO), INTENT(OUT) :: info
+    INTEGER       , INTENT(OUT) :: hdferr
+  END SUBROUTINE H5Pget_mpi_params_f
+
+#else
+
   SUBROUTINE H5Pget_mpi_params_f90(prp_id, comm, info, hdferr)
     IMPLICIT NONE
     INTEGER(HID_T), INTENT(IN)  :: prp_id
@@ -5646,6 +5714,8 @@ END FUNCTION H5pget_mpi_params
   END SUBROUTINE H5Pget_mpi_params_f08
 #endif
 
+#endif
+
 !>
 !! \ingroup FH5P
 !!

fortran/src/hdf5_fortrandll.def.in

@@ -422,17 +422,17 @@ H5P_mp_H5PGET_FILE_SPACE_PAGE_SIZE_F
 H5P_mp_H5PGET_ACTUAL_SELECTION_IO_MODE_F
 ; Parallel
 @H5_NOPAREXP@H5P_mp_H5PSET_FAPL_MPIO_F90
-@H5_NOPAREXP@H5P_mp_H5PSET_FAPL_MPIO_F08
+@H5_NOPAREXP@@H5_NOMPI_F08@H5P_mp_H5PSET_FAPL_MPIO_F08
 @H5_NOPAREXP@H5P_mp_H5PGET_FAPL_MPIO_F90
-@H5_NOPAREXP@H5P_mp_H5PGET_FAPL_MPIO_F08
+@H5_NOPAREXP@@H5_NOMPI_F08@H5P_mp_H5PGET_FAPL_MPIO_F08
 @H5_NOPAREXP@@H5_NOSUBFILING@H5P_mp_H5PSET_FAPL_SUBFILING_F
 @H5_NOPAREXP@@H5_NOSUBFILING@H5P_mp_H5PGET_FAPL_SUBFILING_F
 @H5_NOPAREXP@@H5_NOSUBFILING@H5P_mp_H5PSET_FAPL_IOC_F
 @H5_NOPAREXP@@H5_NOSUBFILING@H5P_mp_H5PGET_FAPL_IOC_F
 @H5_NOPAREXP@H5P_mp_H5PSET_MPI_PARAMS_F90
-@H5_NOPAREXP@H5P_mp_H5PSET_MPI_PARAMS_F08
+@H5_NOPAREXP@@H5_NOMPI_F08@H5P_mp_H5PSET_MPI_PARAMS_F08
 @H5_NOPAREXP@H5P_mp_H5PGET_MPI_PARAMS_F90
-@H5_NOPAREXP@H5P_mp_H5PGET_MPI_PARAMS_F08
+@H5_NOPAREXP@@H5_NOMPI_F08@H5P_mp_H5PGET_MPI_PARAMS_F08
 @H5_NOPAREXP@H5P_mp_H5PSET_DXPL_MPIO_F
 @H5_NOPAREXP@H5P_mp_H5PGET_DXPL_MPIO_F
 @H5_NOPAREXP@H5P_mp_H5PGET_MPIO_ACTUAL_IO_MODE_F