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Cannabis Generative AI Bot

Fetch_Training_Set #309

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Fetch_Training_Set

Fetch_Training_Set #309

Workflow file for this run

.github/workflows/faith_cannabis.yml at bf40e43
name: Cannabis Generative AI Bot
on:
issues:
types:
- labeled
jobs:
cannabis_run:
if: github.event.label.name == 'run_cannabis'
runs-on: "ubuntu-latest"
steps:
- name: Checkout source
uses: actions/checkout@v2
- name: Setup python
uses: actions/setup-python@v2
with:
python-version: 3.7
architecture: x64
- uses: actions/cache@v2
with:
path: ${{ env.pythonLocation }}
key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('dev-requirements.txt') }}
- name: Install
run: |
pip install scikit-learn==0.19.2
pip install pandas
pip install numpy
pip install scipy
pip install pexpect
pip install rdkit-pypi
pip install torch
pip install tqdm
pip install requests
- name: Run Analysis
env:
GITHUB_TOKEN: ${{ secrets.ISSUE_TOKEN }}
run: |
cd machine_learning_operations/cannabis
python main.py --scoring-function activity_model --num-steps 100 --batch-size 10 > results.out
python generate_images.py
- name: Send file README.md to discord channel
uses: sinshutu/upload-to-discord@master
env:
DISCORD_WEBHOOK: ${{ secrets.FAITH_TOKEN }}
with:
args: machine_learning_operations/cannabis/results.png
fetch_training_set:
if: github.event.label.name == 'fetch_cannabis'
runs-on: "ubuntu-latest"
steps:
- name: Checkout source
uses: actions/checkout@v2
- name: Setup python
uses: actions/setup-python@v2
with:
python-version: 3.7
architecture: x64
- uses: actions/cache@v2
with:
path: ${{ env.pythonLocation }}
key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('dev-requirements.txt') }}
- name: Install
run: |
pip install scikit-learn==0.19.2
pip install pandas
pip install numpy
pip install rdkit-pypi
- name: Fetch Training Set
env:
GITHUB_TOKEN: ${{ secrets.ISSUE_TOKEN }}
run: |
cd machine_learning_operations/cannabis
python fetch_training_set.py
ls
- name: Send file README.md to discord channel
uses: sinshutu/upload-to-discord@master
env:
DISCORD_WEBHOOK: ${{ secrets.FAITH_TOKEN }}
with:
args: machine_learning_operations/cannabis/training_set.png
remove_chemical:
if: github.event.label.name == 'remove_smile_cannabis'
runs-on: "ubuntu-latest"
env:
GITHUB_TOKEN: ${{ secrets.ISSUE_TOKEN }}
permissions:
contents: write
steps:
- name: Checkout source
uses: actions/checkout@v2
- name: Setup python
uses: actions/setup-python@v2
with:
python-version: 3.7
architecture: x64
- uses: actions/cache@v2
with:
path: ${{ env.pythonLocation }}
key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('dev-requirements.txt') }}
- name: Install
run: |
pip install pandas
pip install click
- name: Remove Chemical From List
run: |
cd machine_learning_operations/cannabis
python remove_chemical.py --index ${{ github.event.issue.body }}
- name: Commit and Push File
uses: stefanzweifel/git-auto-commit-action@v4
with:
commit_message: Removing Chemical Item
branch: bot-remove-item
create_branch: true
file_pattern: 'machine_learning_operations/cannabis/chemical_list.csv'
retrain_cannabis:
if: github.event.label.name == 'retrain_cannabis'
runs-on: "ubuntu-latest"
steps:
- name: Checkout source
uses: actions/checkout@v2
- name: Setup python
uses: actions/setup-python@v2
with:
python-version: 3.7
architecture: x64
- uses: actions/cache@v2
with:
path: ${{ env.pythonLocation }}
key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('dev-requirements.txt') }}
- name: Install
run: |
pip install scikit-learn==0.19.2
pip install pandas
pip install numpy
pip install scipy
pip install pexpect
pip install rdkit-pypi
pip install torch
pip install tqdm
pip install requests
pip install global-chem
- name: Run Analysis
env:
GITHUB_TOKEN: ${{ secrets.ISSUE_TOKEN }}
run: |
cd machine_learning_operations/cannabis
python smiles_generator.py
python data_structs.py mol.smi
python train_prior.py
- name: Send file README.md to discord channel
uses: sinshutu/upload-to-discord@master
env:
DISCORD_WEBHOOK: ${{ secrets.FAITH_TOKEN }}
with:
args: "Model Retrained"