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Homepage of the Genome Informatics Section
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Building locally ---------------- Install the jekyll Ruby module(s): [ >export GEM_HOME=~/.gem # if you don't have admin rights ] [ >export PATH=$PATH:~/.gem/bin # if you don't have admin rights ] >gem install jekyll >gem install jekyll-paginate # for multipage blog listings >gem install jekyll-feed # for Atom (RSS-like) feed >gem install jekyll-sitemap # for web crawlers Run jekyll in 'watch' mode to update as you modify files (restart if _config.yml changes): jekyll serve --watch & View the locally served page at: http://127.0.0.1:4000 Overall site config ------------------- _data/settings.yml Settings here include what to show on the landing page. Editing/adding news posts ------------------------- _posts/*.md File names should start with a date in the form YYYY-MM-DD. The format is Markdown, but files begin with "front matter" between two "---" lines, which is YAML formatted and used for metadata. Current (optional) front matter variables used: title: The title of the post (the file name without the leading date or any dashes is used if missing) authors: List of authors, keyed to file names in _people/, but without ".md" (http://yaml.org/type/seq.html) excerpt: Optional short description to show in lists. If not provided, everything up to excerpt_separator (defined in _config.yml) will be used, or the entire post if there is no delimiter. excerpt_separator: Define your own excerpt delimiter for the post. comments: Currently off by default; set to true to enable (http://yaml.org/type/bool.html) Standard Markdown (http://daringfireball.net/projects/markdown/) is accepted and will be rendered in the style of the site. It is not recommended to use H1 headers (single flanking "#" or "="-underline) within posts, since they would appear the same size as the post title. Pure HTML can be used within Markdown, which is useful, for example, for centering images: <div style="text-align:center;"><img src="…"/></div> Editing/adding data ------------------- _people/*.md _projects/*.md _data/publications/*.yml For People, the "display_order" field in each person's file will be used for sorting and for Projects, the file name itself is used, and the prefixes for both of these and for Publications (no ".md" or ".yml") can be used as keys for cross-referencing in the YAML "front matter" (between the "---" lines). Though files for People and Projects are Markdown formatted, the data in their YAML front matter is used to generate their corresponding pages, and Markdown content below this is currently ignored. Publications are only used as a data source and do not have individual pages, hence the pure YAML format. See existing files for relevant variables and syntax or the complete schema: schema.pptx Images can be placed in img/ and can be referenced from YAML as "/img/[...]", including any subdirectories.
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