Merge pull request #114 from bc118/add_dih_zero_cite_to_paper #795
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name: CI | |
# Controls when the workflow will run | |
on: | |
# Triggers the workflow on push or pull request events but only for the main branch | |
push: | |
branches: | |
- "main" | |
pull_request: | |
branches: | |
- "main" | |
schedule: | |
- cron: "0 0 * * *" | |
# A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
jobs: | |
test: | |
if: github.event.pull_request.draft == false | |
name: Unit-Test (${{ matrix.os }}, Python ${{ matrix.python-version }}) | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest", "macOs-latest"] | |
python-version: ["3.10", "3.11"] | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- name: create dir | |
run: sudo mkdir /opt/gomc_build | |
- name: clone the GOMC repositrory version 2.75a | |
run: sudo git clone https://github.com/GOMC-WSU/GOMC.git --branch v2.75a /opt/gomc_build/GOMC | |
- name: install cmake | |
run: pip install cmake | |
- name: which python | |
run: which python | |
- name: change permission on GOMC make file and run it | |
run: cd /opt/gomc_build/GOMC/ && sudo chmod u+x metamake.sh && sudo ./metamake.sh NVT | |
- name: Checkout Branch / Pull Request | |
uses: actions/checkout@v3 | |
- name: Install Mamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: environment.yml | |
create-args: >- | |
python=${{ matrix.python-version }} | |
- name: Install Package | |
run: python -m pip install -e . | |
- name: Add GOMC path as symlink to conda bin | |
run: sudo ln -s /opt/gomc_build/GOMC/bin/GOMC_CPU_NVT $CONDA_PREFIX/bin | |
- name: Test (OS -> ${{ matrix.os }} / Python -> ${{ matrix.python-version }}) | |
run: python -m pytest -v --cov=mosdef_dihedral_fit --cov-report=xml --cov-append --cov-config=setup.cfg --color yes --pyargs mosdef_dihedral_fit | |
- name: Upload coverage reports to Codecov | |
uses: codecov/[email protected] | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
slug: GOMC-WSU/MoSDeF-dihedral-fit | |
docker: | |
runs-on: 'ubuntu-latest' | |
needs: test | |
name: 'Build Docker Image' | |
if: github.event_name != 'pull_request' | |
steps: | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v3 | |
- name: Login to DockerHub | |
uses: docker/login-action@v3 | |
with: | |
username: ${{ secrets.DOCKERHUB_USERNAME }} | |
password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
- name: Get Tagged Version | |
run: | | |
echo "DOCKER_TAGS=${{ secrets.DOCKERHUB_USERNAME }}/mosdef-dihedral-fit:${GITHUB_REF_NAME}, ${{ secrets.DOCKERHUB_USERNAME }}/mosdef-dihedral-fit:stable" >> $GITHUB_ENV | |
if: github.ref_type == 'tag' | |
- name: Get Push Version | |
run: | | |
echo "DOCKER_TAGS=${{ secrets.DOCKERHUB_USERNAME }}/mosdef-dihedral-fit:${GITHUB_REF_NAME}, ${{ secrets.DOCKERHUB_USERNAME }}/mosdef-dihedral-fit:latest" >> $GITHUB_ENV | |
if: github.ref_type == 'branch' | |
- name: Docker Image Info | |
run: | | |
echo Docker Image tags: ${DOCKER_TAGS} | |
- name: Build and Push | |
uses: docker/build-push-action@v5 | |
with: | |
push: true | |
tags: ${{ env.DOCKER_TAGS }} |