Merge pull request #146 from GMOD/145-testing-flyway-with-tripal

Automated testing for applying migrations in a named schema

.github/workflows/ALL-testMigrate.yml → .github/workflows/ALL-testMigratePublic.yml

@@ -1,4 +1,4 @@
-name: Testing Flyway Migrations
+name: "Testing Flyway Migrations: Public Schema"
 on:
   workflow_dispatch:
   pull_request:

.github/workflows/ALL-testMigrateTripal.yml

@@ -0,0 +1,39 @@
+name: "Testing Flyway Migrations: Named Schema Teacup"
+on:
+  workflow_dispatch:
+  pull_request:
+    types: [opened, synchronize]
+
+jobs:
+  run-tests:
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        pgsql-version:
+          - "12"
+          - "13"
+          - "14"
+          - "15"
+          - "16"
+    steps:
+      # Check out the repo
+      - name: Checkout Repository
+        uses: actions/checkout@v4
+      # Here we fully build a docker using the current checked out code
+      # to ensure we test the current migrations.
+      - name: Build Docker Image
+        run: |
+          docker build --tag gmod/chado:local \
+          --file docker/Dockerfile \
+          --build-arg PGSQL_VERSION="${{ matrix.pgsql-version }}" \
+          --build-arg SCHEMA_NAME="teacup" \
+          --build-arg APPLY_MIGRATIONS=0 ./
+      # Just spin up docker the good ol' fashion way
+      # then run flyway baseline and migrate.
+      - name: Run Flyway Migrate
+        run: |
+          docker run --name=chadodocker -tid gmod/chado:local
+          sleep 30
+          docker exec chadodocker flyway migrate

docker/Dockerfile

@@ -3,6 +3,7 @@ FROM ubuntu:24.04
 ARG CHADO_VERSION='1.31'
 ARG PGSQL_VERSION='16'
 ARG APPLY_MIGRATIONS='0'
+ARG SCHEMA_NAME='public'
 
 RUN apt-get update
 
@@ -39,12 +40,21 @@ RUN cp flyway.toml /root/flyway.toml \
    && chmod +x /usr/bin/entrypoint.sh \
    && cp motd /etc/motd
 
+RUN if [ "$SCHEMA_NAME" != "public" ] ; then \
+      /etc/init.d/postgresql start \
+      && sleep 30 \
+      && su -c "psql -d chado -c \"ALTER SCHEMA public RENAME TO $SCHEMA_NAME; CREATE SCHEMA public;\"" - postgres \
+      && sed -i "s/public/$SCHEMA_NAME/g" /root/flyway.toml \
+      && /etc/init.d/postgresql stop; \
+   fi
+
 RUN /etc/init.d/postgresql start \
    && sleep 30 \
    && flyway baseline \
    && if [ "$APPLY_MIGRATIONS" = "1" ] ; then \
      flyway migrate; \
-   fi
+   fi \
+   && /etc/init.d/postgresql stop
 
 WORKDIR /Chado