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update AlphaFold 3 compdemos #1101

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Jan 3, 2025
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13 changes: 9 additions & 4 deletions _compdemos/alphafold3.md
Original file line number Diff line number Diff line change
Expand Up @@ -5,15 +5,20 @@ main_author: John Dey
primary_reviewers:
---

How to use AlphaFold3 on the new chorus GPU nodes.

## AlphaFold 3

How to use AlphaFold3 with the new chorus GPU nodes.

Reference data is available here: `/shared/biodata/alphafold3`
#### Reference Data

Reference data is available here: `/shared/biodata/alphafold3`. This data volume is
only available on the Chorus nodes. The reference data is located the HPC Vast storage
system. AlphaFold expects the
public data to be mapped to `/root/public_databases` within the container.

#### Model Parameters
You will need to download your own personal copy of the parameter data. The request form has been
sent to Hutch Legal Console for approval. I will download and share when the paper work is done.
sent to Hutch Legal Console for approval. I will download the parameter data when the paperwork is finalized.
To request access to the AlphaFold 3 model parameters, please complete
[this form](https://forms.gle/svvpY4u2jsHEwWYS6).

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