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Merge pull request #1089 from FredHutch/cbio-demo-day
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Adding Fred Hutch cBioPortal Demo Day Recording
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tefirman authored Nov 15, 2024
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1 change: 1 addition & 0 deletions _dasldemos/fh-cbio-intro.md
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Expand Up @@ -236,6 +236,7 @@ There are many publicly available formatting tools that may help with the format
| [shah-cbioportal-tools](https://github.com/shahcompbio/cbioportal-tools) | Specifically for formatting Copy Number Data expects a seg file and TITAN output | - Could potentially be used for tools other than TITAN that generate a seg file | - Specific for TITAN outputs | [shah-cbioportal-tools](https://github.com/FredHutch/cbioportal-data-formatting/tree/main/05_useful_tools/shah-cbioportal-tools) |
## Quick Links
- [Fred Hutch cBioPortal Demo Day Recording](https://fredhutch.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=1e1ae5d3-8b2f-4be7-acc6-b2290121babc)
- [Public instance of cBioPortal](https://www.cbioportal.org/)
- [cBioPortal data formatting instructions](https://docs.cbioportal.org/file-formats/#introduction)
- [Fred Hutch data formatting tips and tools](https://github.com/FredHutch/cbioportal-data-formatting)
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3 changes: 3 additions & 0 deletions _datascience/cbioportal.md
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Expand Up @@ -20,6 +20,9 @@ The [Fred Hutch deployment of cBioPortal](https://cbioportal.fredhutch.org/) pro
- Find out more about the Fred Hutch instance of cBioPortal and how to upload your study [in the DaSL Resource Library](/dasldemos/fh-cbio-intro/).
- Read more the data formats required for upload and explore a selection of tools that will help with this formatting in the Fred Hutch [cbioportal-data-formatting](https://github.com/FredHutch/cbioportal-data-formatting) repository.
- The creators of cBioPortal at [MSK](https://docs.cbioportal.org/about-us/) provide a great series of [video tutorials](https://www.youtube.com/@cbioportal) that will guide you through how to use the cBioPortal interface.
- Check out the recording below of our Fred Hutch cBioPortal Demo Day demonstrating how to use cBioPortal in general, the benefits of the Fred-Hutch-specific instance, and how to safely and securely upload your own study data. (_Note: some of the processes discussed in this video are specific to Fred Hutch and do not apply to all instances of cBioPortal._)

<iframe src="https://fredhutch.hosted.panopto.com/Panopto/Pages/Embed.aspx?id=1e1ae5d3-8b2f-4be7-acc6-b2290121babc&autoplay=false&offerviewer=true&showtitle=true&showbrand=true&captions=false&interactivity=all" height="405" width="720" style="border: 1px solid #464646;" allowfullscreen allow="autoplay" aria-label="Panopto Embedded Video Player" aria-description="FredHutchcBioPortalDemoDay_111424" ></iframe>


### Technical Documentation and Repositories
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