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Adding initial versions of GitHub Actions
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name: Cromwell Test Run | ||
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on: | ||
workflow_dispatch: | ||
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jobs: | ||
testrun: | ||
runs-on: ubuntu-latest | ||
permissions: write-all | ||
steps: | ||
- | ||
name: Checkout | ||
uses: actions/checkout@v4 | ||
- | ||
name: Set Up Java | ||
uses: actions/setup-java@v4 | ||
with: | ||
distribution: 'temurin' | ||
java-version: '21' | ||
- | ||
name: Pull Cromwell Jarfile | ||
run: wget -q https://github.com/broadinstitute/cromwell/releases/download/86/cromwell-86.jar | ||
- | ||
name: Execute Test Run of WDL Workflows | ||
run: | | ||
java -jar cromwell-86.jar run helloHostname/helloHostname.wdl | ||
java -jar cromwell-86.jar run helloModuleHostname/helloModuleHostname.wdl | ||
java -jar cromwell-86.jar run helloDockerHostname/helloDockerHostname.wdl | ||
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name: WOMtool Validation of WDL Script | ||
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on: | ||
workflow_dispatch: | ||
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permissions: | ||
contents: read | ||
packages: write | ||
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jobs: | ||
womtoolval: | ||
runs-on: ubuntu-latest | ||
steps: | ||
- | ||
name: Checkout | ||
uses: actions/checkout@v4 | ||
- | ||
name: Set Up Java | ||
uses: actions/setup-java@v4 | ||
with: | ||
distribution: 'temurin' | ||
java-version: '21' | ||
- | ||
name: Pull WOMtool Jarfile | ||
run: wget -q https://github.com/broadinstitute/cromwell/releases/download/86/womtool-86.jar | ||
- | ||
name: Validate WDL Scripts | ||
run: | | ||
java -jar womtool-86.jar validate helloHostname/helloHostname.wdl | ||
java -jar womtool-86.jar validate helloModuleHostname/helloModuleHostname.wdl | ||
java -jar womtool-86.jar validate helloDockerHostname/helloDockerHostname.wdl | ||