Add Getting Started notebook

[cansavvy]

Description

The vignette is where people will see a fully runnable example that guides them through the steps. Only steps not included at this time are the demux steps

Fixes # (issue)

Type of change

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• This change requires a documentation update

How Has This Been Tested?

Checklist:

• My code follows the style guidelines of this project
• I have performed a self-review of my code
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to the documentation
• My changes generate no new warnings
• I have added tests that prove my fix is effective or that my feature works
• New and existing unit tests pass locally with my changes
• Any dependent changes have been merged and published in downstream modules

[cansavvy]

Adding fastqc

[cansavvy]

We don't need python or seqtk (as of now)

[cansavvy]

Install our own package here

[cansavvy]

We're going to take a strategy that avoids alignment completely so closing this.