Code

bam to counts conversion #4

Code

Merged

cansavvy merged 42 commits intomainFredHutch/pgmap:mainfrom cansavvy/bam_to_countsFredHutch/pgmap:cansavvy/bam_to_countsCopy head branch name to clipboardOct 28, 2024

+66,426-184,108

Commits

Commits on Oct 24, 2024

• add changes

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• document

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• fix example

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  65357d2

• Some fixes include paired filtered out

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• Proof of concept validation Rmd

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• Add a basic unit test

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Commits on Oct 25, 2024

• Add timer

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• Missing comma

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• Add missing dependencies

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• rearrange anypaired steps

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• Update dependencies for real

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• missing a comma

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• Install from github maybe?

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• update remotes spec

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Commits on Oct 28, 2024

• Add Rsamtools

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• Add biocmanager

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• 3.15

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• Delete old files

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• update some handling

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• Updates

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• updates

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• Updates

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• Remotes

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• Get rid of "--as_cran"

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• Install tidyr

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• It doesn't like the zip thing

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• set mirror

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• Fix Rsamtools

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• Try this?

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• install tidyr

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• Fix install step

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• Try this instead

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• Specify cran mirror

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• Try to get Ubuntu tests working

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• Rhtslib

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• Try this

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• 3.15

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• Add devtools too

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• alter gha

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• Fix spacing

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• Update

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• Add bioc friendly GHA

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