Update docs

FredHutch · Oct 29, 2024 · 994f5dc · 994f5dc
1 parent 1d01ad2
commit 994f5dc
Show file tree

Hide file tree

Showing 8 changed files with 185 additions and 10 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -1,14 +1,22 @@
 # Generated by roxygen2: do not edit by hand
 
 export(calc_counts)
+export(config_folder)
 export(example_data)
 export(example_data_folder)
+export(fastq_to_bam)
+export(get_stats)
+export(grab_paired_files)
 export(sample_count)
 import(dplyr)
+importFrom(Rbowtie2,bowtie2_build)
+importFrom(Rbowtie2,bowtie2_samtools)
 importFrom(Rsamtools,ScanBamParam)
+importFrom(Rsamtools,quickBamFlagSummary)
 importFrom(Rsamtools,scanBam)
 importFrom(Rsamtools,scanBamFlag)
 importFrom(furrr,future_map)
 importFrom(furrr,future_pmap)
 importFrom(purrr,reduce)
 importFrom(tibble,rownames_to_column)
+importFrom(tidyr,pivot_longer)
diff --git a/man/calc_counts.Rd b/man/calc_counts.Rd
diff --git a/man/config_folder.Rd b/man/config_folder.Rd
diff --git a/man/example_data_folder.Rd b/man/example_data_folder.Rd
diff --git a/man/fastq_to_bam.Rd b/man/fastq_to_bam.Rd
diff --git a/man/get_stats.Rd b/man/get_stats.Rd
diff --git a/man/grab_paired_files.Rd b/man/grab_paired_files.Rd
diff --git a/man/sample_count.Rd b/man/sample_count.Rd