updates

DESCRIPTION

@@ -13,16 +13,8 @@ License: GPL-3
 URL: https://github.com/FredHutch/gimap
 BugReports: https://github.com/FredHutch/gimap/issues
 Imports:
-    readr,
     dplyr,
-    tidyr,
     knitr,
-    rmarkdown,
-    ggplot2,
-    magrittr,
-    kableExtra,
-    pheatmap,
-    purrr,
     utils,
     stats,
     stringr,

R/bam_to_counts.R

@@ -1,7 +1,7 @@
 #' Obtain the counts for a group of samples
 #' @description This function takes a forward and reverse bam files for a group of samples and returns the counts and stats.
 #' @param bam_dir a file path to a directory where the bam files associated with the sample names will be stored. 
-#' @param sample_name a character vector that indicates the name of the samples as they are listed in the file names. 
+#' @param sample_names a character vector that indicates the name of the samples as they are listed in the file names. 
 #' @param time TRUE/FALSE you want the duration this takes to run printed out
 #' @importFrom furrr future_pmap future_map 
 #' @importFrom purrr reduce