Not sure why load_all() is failing

DESCRIPTION

@@ -23,12 +23,8 @@ Imports:
     tibble,
     fastmap (>= 1.2.0), 
     BiocManager, 
-Suggests:
-    testthat (>= 3.0.0),
-    roxygen2,
-Remotes:
-    Rhtslib=bioc::3.3/Rhtslib, 
-    Rsamtools=bioc::3.3/Rsamtools,
+Suggests: testthat (>= 3.0.0), roxygen2,
+Remotes: Rhtslib=bioc::3.3/Rhtslib, Rsamtools=bioc::3.3/Rsamtools, Rbowtie2=bioc::3.3/Rbowtie2
 Config/testthat/edition: 3
 Encoding: UTF-8
 RoxygenNote: 7.3.2

R/alignment.R

@@ -8,8 +8,9 @@
 #' @param time TRUE/FALSE you want the duration this takes to run printed out
 #' @param save_logs TRUE/FALSE you want the logs? They will be saved as the sample name
 #' @param overwrite TRUE/FALSE should existing bam files of the same name be overwritten?
-#' @importFrom furrr future_pmap future_map8p
-#' @importFrom purrr reduce
+#' @importFrom furrr future_pmap future_map
+#' @importFrom tidyr pivot_longer
+#' @importFrom Rbowtie2 bowtie2_samtools bowtie2_build
 #' @import dplyr
 #' @importFrom tibble rownames_to_column
 #' @export

R/get_stats.R

@@ -5,8 +5,8 @@
 #' @param output_dir a file path to where you'd like the stats to be saved to. By default its "stats" folder. This folder will be
 #' created if it doesn't exist.
 #' @param time TRUE/FALSE you want the duration this takes to run printed out
-#' @importFrom furrr future_pmap future_map
-#' @importFrom purrr reduce
+#' @importFrom furrr future_map
+#' @importFrom Rsamtools quickBamFlagSummary
 #' @import dplyr
 #' @importFrom tibble rownames_to_column
 #' @export
@@ -51,6 +51,7 @@ get_stats <- function(bam_dir, sample_names, output_dir = "stats", time = FALSE)
   })
 
   if (time) message(paste0("Done(", signif(as.numeric(difftime(Sys.time(), timing, units = "mins")), 2), "m elapsed).\n"))
+
   # Return as a list of two data frames
   message("Stats saved to", output_dir)
 }

R/utils.R

@@ -3,7 +3,6 @@ utils::globalVariables(c(
   "rname", ".")
   )
 
-
 #' Returns file paths to example data for package
 #' @description This function loads and returns file paths to example data for the packagae. Which dataset is returned must be specified
 #' @param which_data options are "bam" or "fastq"; specifies which example dataset should be returned