--- re-building 'quick-start.Rmd' using rmarkdown

processing vignette 'quick-start.Rmd' failed with diagnostics:

processing vignette 'timepoint-example.Rmd' failed with diagnostics:

processing vignette 'treatment_example.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

No such keg: /opt/homebrew/Cellar/[email protected]

could not find function "hello"

could not find function "hello"

there is no package called ‘rcmdcheck’

Process completed with exit code 1.

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

No files were found with the provided path: check. No artifacts will be uploaded.

pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf

HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!

Found the following significant warnings:

Functions or methods with usage in Rd file 'hello.Rd' but not in code:

Undocumented arguments in Rd file 'gimap_rep_stats.Rd'

Found the following significant warnings:

Functions or methods with usage in Rd file 'hello.Rd' but not in code:

Undocumented arguments in Rd file 'gimap_rep_stats.Rd'