Do not duplicate plotly javascript

FredHutch · Feb 5, 2024 · 33aedb6 · 33aedb6
1 parent c2e6193
commit 33aedb6
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/bin/bin_metagenomes.py b/bin/bin_metagenomes.py
@@ -1007,7 +1007,7 @@ def write_image(
                 for i in [1, 2, 4, 5, 6]
             }
         )
-        fig.write_html(f"{output_fp}.html")
+        fig.write_html(f"{output_fp}.html", include_plotlyjs="cdn")
         for ext in ['png', 'pdf']:
             fig.write_image(
                 f"{output_fp}.{ext}",

diff --git a/templates/concatenate_alignments.py b/templates/concatenate_alignments.py
@@ -90,7 +90,7 @@ def gene_frequency_bars(aln: pd.DataFrame):
         labels=dict(sseqid="Number of Genomes", index="Gene"),
         title="Gene Detection Frequency"
     )
-    fig.write_html("gene_frequency_bars.html")
+    fig.write_html("gene_frequency_bars.html", include_plotlyjs="cdn")
 
 
 def genome_frequency_bars(aln: pd.DataFrame):
@@ -113,7 +113,7 @@ def genome_frequency_bars(aln: pd.DataFrame):
         labels=dict(genome="Number of Genes", index="Genome"),
         title="Genome Size Distribution"
     )
-    fig.write_html("genome_frequency_bars.html")
+    fig.write_html("genome_frequency_bars.html", include_plotlyjs="cdn")
 
 
 def alignment_qc_metrics(aln: pd.DataFrame):
@@ -141,7 +141,7 @@ def alignment_qc_metrics(aln: pd.DataFrame):
         title="Gene Detection QC Metrics",
         color_continuous_scale=colorscale
     )
-    fig.write_html("alignment_qc_metrics.html")
+    fig.write_html("alignment_qc_metrics.html", include_plotlyjs="cdn")
 
 
 def alignment_heatmap(aln: pd.DataFrame):
@@ -164,7 +164,7 @@ def alignment_heatmap(aln: pd.DataFrame):
         color_continuous_scale="Blues",
         labels=dict(sseqid="Gene", genome="Genome")
     )
-    fig.write_html("alignment_heatmap.html")
+    fig.write_html("alignment_heatmap.html", include_plotlyjs="cdn")
 
 
 def gene_frequency_genome_size(aln: pd.DataFrame):
@@ -213,7 +213,7 @@ def gene_frequency_genome_size(aln: pd.DataFrame):
         ),
         hover_data=["genome"]
     )
-    fig.write_html("gene_frequency_genome_size.html")
+    fig.write_html("gene_frequency_genome_size.html", include_plotlyjs="cdn")
 
 
 def sort(df: pd.DataFrame, method="average", metric="euclidean"):