Merge pull request #100 from FlyBase/release_2024-12-04

release files 2024-12-04

.github/workflows/qc.yml

@@ -19,7 +19,7 @@ jobs:
   ontology_qc:
     # The type of runner that the job will run on
     runs-on: ubuntu-latest
-    container: obolibrary/odkfull:v1.5.2
+    container: obolibrary/odkfull:v1.5.4
 
     # Steps represent a sequence of tasks that will be executed as part of the job
     steps:

fbdv.obo

@@ -1,6 +1,6 @@
 format-version: 1.2
-data-version: fbdv/releases/2024-10-17
-date: 17:10:2024 11:23
+data-version: fbdv/releases/2024-12-04
+date: 04:12:2024 17:03
 subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation"
 subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation"
 subsetdef: goslim_aspergillus "Aspergillus GO slim"
@@ -16,22 +16,21 @@ subsetdef: goslim_yeast "Yeast GO slim"
 subsetdef: gosubset_prok "Prokaryotic GO subset"
 default-namespace: FlyBase_development_CV
 namespace-id-rule: * FBdv:$sequence(8,7000,10000)$
-idspace: dc http://purl.org/dc/elements/1.1/ 
 idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# 
 idspace: terms http://purl.org/dc/terms/ 
 ontology: fbdv.obo
-property_value: dc:creator "http://orcid.org/0000-0002-1373-1705" xsd:string
-property_value: dc:creator "http://orcid.org/0000-0002-7073-9172" xsd:string
-property_value: dc:creator "https://orcid.org/0000-0001-5948-3092" xsd:string
-property_value: dc:creator "https://orcid.org/0000-0002-0027-0858" xsd:string
-property_value: dc:description "An ontology of Drosophila melanogaster developmental stages." xsd:string
-property_value: dc:title "Drosophila Developmental Ontology" xsd:string
 property_value: IAO:0000700 FBdv:00000000
 property_value: IAO:0000700 FBdv:00005259
 property_value: IAO:0000700 FBdv:00007013
 property_value: IAO:0000700 FBdv:00007024
-property_value: owl:versionInfo "2024-10-17" xsd:string
+property_value: owl:versionInfo "2024-12-04" xsd:string
+property_value: terms:creator "http://orcid.org/0000-0002-1373-1705" xsd:string
+property_value: terms:creator "http://orcid.org/0000-0002-7073-9172" xsd:string
+property_value: terms:creator "https://orcid.org/0000-0001-5948-3092" xsd:string
+property_value: terms:creator "https://orcid.org/0000-0002-0027-0858" xsd:string
+property_value: terms:description "An ontology of Drosophila melanogaster developmental stages." xsd:string
 property_value: terms:license "https://creativecommons.org/licenses/by/4.0/" xsd:string
+property_value: terms:title "Drosophila Developmental Ontology" xsd:string
 
 [Term]
 id: FBdv:00000000

fly_development.obo

@@ -1,6 +1,6 @@
 format-version: 1.2
-data-version: 2024-10-17
-date: 17:10:2024 11:23
+data-version: 2024-12-04
+date: 04:12:2024 17:04
 subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation"
 subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation"
 subsetdef: goslim_aspergillus "Aspergillus GO slim"

src/ontology/Makefile

@@ -1,7 +1,7 @@
 # ----------------------------------------
 # Makefile for fbdv
 # Generated using ontology-development-kit
-# ODK Version: v1.5.2
+# ODK Version: v1.5.4
 # ----------------------------------------
 # IMPORTANT: DO NOT EDIT THIS FILE. To override default make goals, use fbdv.Makefile instead
 
@@ -46,7 +46,7 @@ REPORT_PROFILE_OPTS =
 OBO_FORMAT_OPTIONS =        
 SPARQL_VALIDATION_CHECKS =  owldef-self-reference iri-range label-with-iri multiple-replaced_by dc-properties 
 SPARQL_EXPORTS =            basic-report class-count-by-prefix edges xrefs obsoletes synonyms 
-ODK_VERSION_MAKEFILE =      v1.5.2
+ODK_VERSION_MAKEFILE =      v1.5.4
 
 TODAY ?=                    $(shell date +%Y-%m-%d)
 OBODATE ?=                  $(shell date +'%d:%m:%Y %H:%M')

src/ontology/imports/merged_import.owl

@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/fbdv/imports/merged_import.owl>
-<http://purl.obolibrary.org/obo/fbdv/releases/2024-10-17/imports/merged_import.owl>
-Annotation(owl:versionInfo "2024-10-17")
+<http://purl.obolibrary.org/obo/fbdv/releases/2024-12-04/imports/merged_import.owl>
+Annotation(owl:versionInfo "2024-12-04")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))
@@ -77,8 +77,11 @@ Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0100001>))
 Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/description>))
 Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/title>))
 Declaration(AnnotationProperty(<http://purl.org/dc/terms/contributor>))
+Declaration(AnnotationProperty(<http://purl.org/dc/terms/creator>))
 Declaration(AnnotationProperty(<http://purl.org/dc/terms/date>))
+Declaration(AnnotationProperty(<http://purl.org/dc/terms/description>))
 Declaration(AnnotationProperty(<http://purl.org/dc/terms/license>))
+Declaration(AnnotationProperty(<http://purl.org/dc/terms/title>))
 Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#default-namespace>))
 Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId>))
 Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym>))