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downgraded setuptools to version 33.1.1
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b-schubert committed Jan 25, 2017
1 parent 5ad962b commit 441a6b1
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -75,14 +75,16 @@ ENV LD_LIBRARY_PATH /usr/local/lib:$LD_LIBRARY_PATH
ENV HDF5_DIR /usr/local/

RUN pip install --upgrade pip && pip install \
setuptools==33.1.1 \
cython \
numpy \
pyomo \
pysam \
matplotlib \
tables \
pandas \
future
future \
&& pip install git+https://github.com/FRED-2/Fred2@master

#installing optitype form git repository (version Dec 09 2015) and wirtig config.ini
RUN git clone https://github.com/FRED-2/OptiType.git \
Expand Down Expand Up @@ -119,7 +121,7 @@ RUN hg clone https://bitbucket.org/sebastian_boegel/seq2hla \
&& chmod 777 /usr/local/bin/seq2hla/seq2HLA.py

#Fred2
RUN pip install --upgrade pip && pip install git+https://github.com/FRED-2/Fred2@master
#RUN pip install --upgrade pip && pip install git+https://github.com/FRED-2/Fred2@master


#set envirnomental variables for prediction methods
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