solve icb related segfault #2866
Workflow file for this run
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| name: FESOM2 main test | |
| # Controls when the action will run. Triggers the workflow on push or pull request. | |
| on: [push, pull_request] | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| general_test: | |
| # Containers must run in Linux based operating systems | |
| runs-on: ubuntu-latest | |
| # Docker Hub image that `container-job` executes in | |
| container: ghcr.io/fesom/fesom2_docker:fesom2_test_refactoring-master | |
| # Service containers to run with `gfortran_ubuntu` | |
| steps: | |
| # NK: this changes working directory to fesom2 | |
| - uses: actions/checkout@v2 | |
| - name: Git safe directory | |
| run: | | |
| git config --global --add safe.directory ${PWD} | |
| - name: Compile model (binary) | |
| run: | | |
| ./configure.sh ubuntu | |
| - name: Compile model (ifs_interface) | |
| run: | | |
| export BUILD_DIR=$PWD/build.ifs_interface | |
| ./configure.sh ubuntu -DENABLE_IFS_INTERFACE=ON -DCMAKE_INSTALL_PREFIX=$PWD/install.ifs_interface | |
| - name: Test downstream from install-dir | |
| run: | | |
| export fesom_ROOT=${PWD} | |
| rm -rf test_downstream/build | |
| cmake -S test_downstream -B test_downstream/build -DASSERT_HAVE_IFS_INTERFACE=OFF -DASSERT_FESOM_DIR=${fesom_ROOT} | |
| cmake --build test_downstream/build | |
| test_downstream/build/main | |
| - name: Test downstream from ifs_interface build-dir | |
| run: | | |
| export fesom_ROOT=$PWD/build.ifs_interface | |
| rm -rf test_downstream/build | |
| cmake -S test_downstream -B test_downstream/build -DASSERT_HAVE_IFS_INTERFACE=ON -DASSERT_FESOM_DIR=${fesom_ROOT} | |
| cmake --build test_downstream/build | |
| test_downstream/build/main | |
| - name: Test downstream from ifs_interface install-dir | |
| run: | | |
| export fesom_ROOT=$PWD/install.ifs_interface | |
| rm -rf test_downstream/build | |
| cmake -S test_downstream -B test_downstream/build -DASSERT_HAVE_IFS_INTERFACE=ON -DASSERT_FESOM_DIR=${fesom_ROOT} | |
| cmake --build test_downstream/build | |
| test_downstream/build/main | |
| - name: Create global test run | |
| run: | | |
| mkrun pi test_pi -m docker | |
| - name: FESOM2 global test run | |
| run: | | |
| cd work_pi | |
| chmod +x job_docker_new | |
| ./job_docker_new | |
| - name: Check global results | |
| run: | | |
| cd work_pi | |
| fcheck . | |
| - name: Check UGRID Compliance | |
| run: | | |
| pip install ugrid-checks xarray | |
| # Needed to combine the mesh diag and output | |
| python3 -c "import xarray as xr; ds1 = xr.open_dataset('./test/output_pi/sst.fesom.1948.nc'); ds2 = xr.open_dataset('./test/output_pi/fesom.mesh.diag.nc'); xr.merge([ds1, ds2]).to_netcdf('./test/output_pi/merged_ugrid_check.nc')" | |
| ugrid-checker ./test/output_pi/merged_ugrid_check.nc | |
| - name: Check restarts | |
| run: | | |
| cd work_pi | |
| ./job_docker_new | |
| - name: Create channel test run | |
| run: | | |
| mkrun souf test_souf -m docker | |
| - name: FESOM2 channel test run | |
| run: | | |
| cd work_souf | |
| chmod +x job_docker_new | |
| ./job_docker_new | |
| - name: Check channel results | |
| run: | | |
| cd work_souf | |
| fcheck . | |
| - name: Check partitioner compilation | |
| run: | | |
| cd mesh_part | |
| bash -l configure.sh ubuntu | |
| - name: Run partitioner | |
| run: | | |
| cd work_pi | |
| cp ../bin/fesom_ini.x . | |
| ./fesom_ini.x | |