Merge branch 'load-omex-archive' into nfdi4health #52

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: Python application

	on:
	push:
	pull_request:
	branches: [ "master", "develop" ]

	permissions:
	contents: read

	jobs:
	test-runner:

	runs-on: ubuntu-latest
	services:
	redis-stack:
	image: redis/redis-stack-server
	options: >-
	--health-cmd "redis-cli ping"
	--health-interval 10s
	--health-timeout 5s
	--health-retries 5
	ports:
	- 6379:6379

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python 3.9
	uses: actions/setup-python@v3
	with:
	python-version: "3.9"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r requirements.txt
	pip install -r test-requirements.txt
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Lint with black
	run: \|
	black --check --verbose -- .
	- name: Test with pytest
	run: \|
	cp app/dependencies/settings.py.template app/dependencies/settings.py
	pytest
	env:
	REDIS_URL: localhost
	REDIS_PORT: 6379
	FAIR_COMBINE_ENV: test
	CELERY_SECRET_KEY: ${{ secrets.CELERY_SECRET_KEY }}

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