First principles datasets #535
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python application | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| # lfs: true | |
| - name: Create LFS file list | |
| run: git lfs ls-files -l | cut -d' ' -f1 | sort > .lfs-assets-id | |
| - name: Restore LFS cache | |
| uses: actions/cache@v2 | |
| id: lfs-cache | |
| with: | |
| path: .git/lfs | |
| key: ${{ runner.os }}-lfs-${{ hashFiles('.lfs-assets-id') }}-v1 | |
| - name: Git LFS Pull | |
| run: git lfs pull | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.8 | |
| - name: Install dependencies | |
| run: | | |
| pip install ".[dev]" | |
| sudo apt-get update | |
| sudo apt-get install libssl-dev libcurl4-openssl-dev | |
| - name: Test with nose | |
| run: | | |
| nosetests -s -v | |
| - name: Generate profiling reports | |
| run: | | |
| python -m pmlb.profiling | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install R packages | |
| run: Rscript -e 'install.packages(c("rmarkdown", "plotly", "dplyr", "htmlwidgets", "htmltools", "jsonlite", "readr", "DT", "remotes", "pmlbr"))' | |
| - name: Set up reticulate | |
| run: | | |
| install.packages("reticulate") | |
| library(reticulate) | |
| reticulate::install_miniconda() | |
| reticulate::py_config() | |
| reticulate::py_discover_config() | |
| shell: Rscript {0} | |
| - name: Build site | |
| run: | | |
| Rscript -e 'print(reticulate::py_discover_config())' | |
| Rscript -e 'rmarkdown::render_site(input = "docs_sources")' | |
| - run: ls -lhR docs/ | |
| - name: Deploy | |
| if: github.ref == 'refs/heads/master' && github.event_name == 'push' && !github.event.repository.fork | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: docs | |
| # keep existing files if no changes, unless commit message has regenerate_profiles | |
| keep_files: ${{ env.regenerate_profiles == null }} |