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[![Logo](./docs/source/_static/logo_blank_small.png)]() | ||
[![logo](./docs/source/_static/logo_blank_small.png)]() | ||
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[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://github.com/EpistasisLab/Aliro/blob/master/LICENSE) [![Aliro CI/CD](https://github.com/EpistasisLab/Aliro/actions/workflows/aliro_tests.yml/badge.svg)](https://github.com/EpistasisLab/Aliro/actions/workflows/aliro_tests.yml) [![Coverage Status](https://coveralls.io/repos/github/EpistasisLab/pennai/badge.svg)](https://coveralls.io/github/EpistasisLab/pennai) | ||
[![license: gpl v3](https://img.shields.io/badge/license-gpl%20v3-blue.svg)](https://github.com/epistasislab/aliro/blob/master/license) [![aliro ci/cd](https://github.com/epistasislab/aliro/actions/workflows/aliro_tests.yml/badge.svg)](https://github.com/epistasislab/aliro/actions/workflows/aliro_tests.yml) [![coverage status](https://coveralls.io/repos/github/epistasislab/pennai/badge.svg)](https://coveralls.io/github/epistasislab/pennai) | ||
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Aliro: AI-Driven Data Science | ||
aliro: ai-driven data science | ||
================================== | ||
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**Aliro** is an easy-to-use data science assistant. | ||
It allows researchers without machine learning or coding expertise to run supervised machine learning analysis through a clean web interface. | ||
It provides results visualization and reproducible scripts so that the analysis can be taken anywhere. | ||
And, it has an *AI* assistant that can choose the analysis to run for you. Dataset profiles are generated and added to a knowledgebase as experiments are run, and the AI assistant learns from this to give more informed recommendations as it is used. Aliro comes with an initial knowledgebase generated from the [PMLB benchmark suite](https://github.com/EpistasisLab/penn-ml-benchmarks). | ||
**aliro** is an easy-to-use data science assistant. | ||
it allows researchers without machine learning or coding expertise to run supervised machine learning analysis through a clean web interface. | ||
it provides results visualization and reproducible scripts so that the analysis can be taken anywhere. | ||
and, it has an *ai* assistant that can choose the analysis to run for you. dataset profiles are generated and added to a knowledgebase as experiments are run, and the ai assistant learns from this to give more informed recommendations as it is used. aliro comes with an initial knowledgebase generated from the [pmlb benchmark suite](https://github.com/epistasislab/penn-ml-benchmarks). | ||
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[**Documentation**](https://epistasislab.github.io/Aliro/) | ||
[**documentation**](https://epistasislab.github.io/aliro/) | ||
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[**Latest Production Release**](https://github.com/EpistasisLab/Aliro/releases/latest) | ||
[**latest production release**](https://github.com/epistasislab/aliro/releases/latest) | ||
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Browse the repo: | ||
- [User Guide](./docs/guides/userGuide.md) | ||
- [Developer Guide](./docs/guides/developerGuide.md) | ||
browse the repo: | ||
- [user guide](./docs/guides/userguide.md) | ||
- [developer guide](./docs/guides/developerguide.md) | ||
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About the Project | ||
about the project | ||
================= | ||
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Aliro is actively developed by the [Institute for Biomedical Informatics](http://upibi.org) at the University of Pennsylvania. | ||
Contributors include Heather Williams, Weixuan Fu, William La Cava, Josh Cohen, | ||
Steve Vitale, Sharon Tartarone, Randal Olson, Patryk Orzechowski, and Jason Moore. | ||
aliro is actively developed by the Center for Artificial Intelligence Research (CAIR) in the [Department of Computational Biomedicine](https://www.cedars-sinai.edu/research/departments-institutes/computational-biomedicine.html) at [Cedars-Sinai Medical Center](https://www.cedars-sinai.org/) in Los Angeles. | ||
Contributors include Hyunjun Choi, Miguel Hernandez, Nick Matsumoto, Jay Moran, Paul Wang, and Jason Moore (PI). | ||
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Cite | ||
cite | ||
==== | ||
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An up-to-date paper describing AI methodology is available in [Bioinformatics](https://doi.org/10.1093/bioinformatics/btaa698) and [arxiv](http://arxiv.org/abs/1905.09205). | ||
Here's the biblatex: | ||
an up-to-date paper describing ai methodology is available in [bioinformatics](https://doi.org/10.1093/bioinformatics/btaa698) and [arxiv](http://arxiv.org/abs/1905.09205). | ||
here's the biblatex: | ||
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``` | ||
@article{pennai_2020, | ||
title = {Evaluating recommender systems for {AI}-driven biomedical informatics}, | ||
title = {evaluating recommender systems for {ai}-driven biomedical informatics}, | ||
url = {https://doi.org/10.1093/bioinformatics/btaa698}, | ||
journaltitle = {Bioinformatics}, | ||
journaltitle = {bioinformatics}, | ||
doi = {10.1093/bioinformatics/btaa698}, | ||
year = {2020}, | ||
author = {La Cava, William and Williams, Heather and Fu, Weixuan and Vitale, Steve and Srivatsan, Durga and Moore, Jason H.}, | ||
author = {la cava, william and williams, heather and fu, weixuan and vitale, steve and srivatsan, durga and moore, jason h.}, | ||
eprinttype = {arxiv}, | ||
eprint = {1905.09205}, | ||
keywords = {Computer Science - Machine Learning, Computer Science - Information Retrieval}, | ||
keywords = {computer science - machine learning, computer science - information retrieval}, | ||
} | ||
``` | ||
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You can also find our original position paper on [arxiv](https://arxiv.org/abs/1705.00594). | ||
you can also find our original position paper on [arxiv](https://arxiv.org/abs/1705.00594). |