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[![Logo](./docs/source/_static/logo_blank_small.png)]()
[![logo](./docs/source/_static/logo_blank_small.png)]()

[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://github.com/EpistasisLab/Aliro/blob/master/LICENSE) [![Aliro CI/CD](https://github.com/EpistasisLab/Aliro/actions/workflows/aliro_tests.yml/badge.svg)](https://github.com/EpistasisLab/Aliro/actions/workflows/aliro_tests.yml) [![Coverage Status](https://coveralls.io/repos/github/EpistasisLab/pennai/badge.svg)](https://coveralls.io/github/EpistasisLab/pennai)
[![license: gpl v3](https://img.shields.io/badge/license-gpl%20v3-blue.svg)](https://github.com/epistasislab/aliro/blob/master/license) [![aliro ci/cd](https://github.com/epistasislab/aliro/actions/workflows/aliro_tests.yml/badge.svg)](https://github.com/epistasislab/aliro/actions/workflows/aliro_tests.yml) [![coverage status](https://coveralls.io/repos/github/epistasislab/pennai/badge.svg)](https://coveralls.io/github/epistasislab/pennai)

Aliro: AI-Driven Data Science
aliro: ai-driven data science
==================================

**Aliro** is an easy-to-use data science assistant.
It allows researchers without machine learning or coding expertise to run supervised machine learning analysis through a clean web interface.
It provides results visualization and reproducible scripts so that the analysis can be taken anywhere.
And, it has an *AI* assistant that can choose the analysis to run for you. Dataset profiles are generated and added to a knowledgebase as experiments are run, and the AI assistant learns from this to give more informed recommendations as it is used. Aliro comes with an initial knowledgebase generated from the [PMLB benchmark suite](https://github.com/EpistasisLab/penn-ml-benchmarks).
**aliro** is an easy-to-use data science assistant.
it allows researchers without machine learning or coding expertise to run supervised machine learning analysis through a clean web interface.
it provides results visualization and reproducible scripts so that the analysis can be taken anywhere.
and, it has an *ai* assistant that can choose the analysis to run for you. dataset profiles are generated and added to a knowledgebase as experiments are run, and the ai assistant learns from this to give more informed recommendations as it is used. aliro comes with an initial knowledgebase generated from the [pmlb benchmark suite](https://github.com/epistasislab/penn-ml-benchmarks).

[**Documentation**](https://epistasislab.github.io/Aliro/)
[**documentation**](https://epistasislab.github.io/aliro/)

[**Latest Production Release**](https://github.com/EpistasisLab/Aliro/releases/latest)
[**latest production release**](https://github.com/epistasislab/aliro/releases/latest)

Browse the repo:
- [User Guide](./docs/guides/userGuide.md)
- [Developer Guide](./docs/guides/developerGuide.md)
browse the repo:
- [user guide](./docs/guides/userguide.md)
- [developer guide](./docs/guides/developerguide.md)

About the Project
about the project
=================

Aliro is actively developed by the [Institute for Biomedical Informatics](http://upibi.org) at the University of Pennsylvania.
Contributors include Heather Williams, Weixuan Fu, William La Cava, Josh Cohen,
Steve Vitale, Sharon Tartarone, Randal Olson, Patryk Orzechowski, and Jason Moore.
aliro is actively developed by the Center for Artificial Intelligence Research (CAIR) in the [Department of Computational Biomedicine](https://www.cedars-sinai.edu/research/departments-institutes/computational-biomedicine.html) at [Cedars-Sinai Medical Center](https://www.cedars-sinai.org/) in Los Angeles.
Contributors include Hyunjun Choi, Miguel Hernandez, Nick Matsumoto, Jay Moran, Paul Wang, and Jason Moore (PI).

Cite
cite
====

An up-to-date paper describing AI methodology is available in [Bioinformatics](https://doi.org/10.1093/bioinformatics/btaa698) and [arxiv](http://arxiv.org/abs/1905.09205).
Here's the biblatex:
an up-to-date paper describing ai methodology is available in [bioinformatics](https://doi.org/10.1093/bioinformatics/btaa698) and [arxiv](http://arxiv.org/abs/1905.09205).
here's the biblatex:

```
@article{pennai_2020,
title = {Evaluating recommender systems for {AI}-driven biomedical informatics},
title = {evaluating recommender systems for {ai}-driven biomedical informatics},
url = {https://doi.org/10.1093/bioinformatics/btaa698},
journaltitle = {Bioinformatics},
journaltitle = {bioinformatics},
doi = {10.1093/bioinformatics/btaa698},
year = {2020},
author = {La Cava, William and Williams, Heather and Fu, Weixuan and Vitale, Steve and Srivatsan, Durga and Moore, Jason H.},
author = {la cava, william and williams, heather and fu, weixuan and vitale, steve and srivatsan, durga and moore, jason h.},
eprinttype = {arxiv},
eprint = {1905.09205},
keywords = {Computer Science - Machine Learning, Computer Science - Information Retrieval},
keywords = {computer science - machine learning, computer science - information retrieval},
}
```

You can also find our original position paper on [arxiv](https://arxiv.org/abs/1705.00594).
you can also find our original position paper on [arxiv](https://arxiv.org/abs/1705.00594).

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