ci: ruff format, isort, and lint #321
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| push: | |
| branches: [master] | |
| pull_request: | |
| branches: [master] | |
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| if: "!contains(github.event.head_commit.message, 'noci')" | |
| strategy: | |
| matrix: | |
| python-version: ['3.11'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| pip install uv | |
| uv venv | |
| source .venv/bin/activate | |
| # keep the virtual environment activated | |
| echo "source .venv/bin/activate" >> ~/.bashrc | |
| uv pip install -e '.[test]' | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --statistics | |
| - name: Test with pytest and coverage | |
| run: | | |
| coverage run --source=pdb2pqr -m pytest | |
| coverage report -m | tee coverage.txt | |
| coverage html | |
| - name: Upload coverage results | |
| run: bash <(curl -s https://codecov.io/bash) | |
| - name: Store coverage text results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-text | |
| path: coverage.txt | |
| - name: Store coverage HTML results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-html | |
| path: htmlcov/* |