Merge pull request #10 from johnstairs/johnstairs/update-template

Update template

.devcontainer/Dockerfile

@@ -30,28 +30,24 @@ ARG USER_UID=1000
 ARG USER_GID=$USER_UID
 ARG CONDA_GID=900
 ARG CONDA_ENVIRONMENT_NAME=prd
-ARG VSCODE_DEV_CONTAINERS_SCRIPT_LIBRARY_VERSION=v0.229.0
 
 RUN apt-get update && apt-get install -y \
     libc6-dbg \
     && rm -rf /var/lib/apt/lists/*
 
 # Enable non-root Docker access in container
-ARG ENABLE_NONROOT_DOCKER="true"
-# Use the OSS Moby CLI instead of the licensed Docker CLI
-ARG USE_MOBY="false"
-RUN script=$(curl -fsSL "https://raw.githubusercontent.com/microsoft/vscode-dev-containers/${VSCODE_DEV_CONTAINERS_SCRIPT_LIBRARY_VERSION}/script-library/docker-debian.sh") && bash -c "$script" -- "${ENABLE_NONROOT_DOCKER}" "/var/run/docker-host.sock" "/var/run/docker.sock" "${USERNAME}" "${USE_MOBY}"
+ARG DOCKER_VERSION="27.0.3"
+RUN script=$(curl -fsSL "https://raw.githubusercontent.com/devcontainers/features/2951f0481a488ea43a6f2ea6f18a47f0a0bf744d/src/docker-outside-of-docker/install.sh") \
+    && VERSION=${DOCKER_VERSION} DOCKERDASHCOMPOSEVERSION="none" bash -c "$script"
 
 # Setting the ENTRYPOINT to docker-init.sh will configure non-root access to
 # the Docker socket if "overrideCommand": false is set in devcontainer.json.
 # The script will also execute CMD if you need to alter startup behaviors.
 ENTRYPOINT [ "/usr/local/share/docker-init.sh" ]
 CMD [ "sleep", "infinity" ]
 
-ARG MAMBAFORGE_VERSION=22.9.0-2
-
 # Based on https://github.com/conda-forge/miniforge-images/blob/master/ubuntu/Dockerfile
-RUN wget --no-hsts --quiet https://github.com/conda-forge/miniforge/releases/download/${MAMBAFORGE_VERSION}/Mambaforge-${MAMBAFORGE_VERSION}-Linux-$(uname -m).sh -O /tmp/miniforge.sh \
+RUN wget --no-hsts --quiet https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh -O /tmp/miniforge.sh \
     && /bin/bash /tmp/miniforge.sh -b -p /opt/conda \
     && rm /tmp/miniforge.sh \
     && /opt/conda/bin/conda clean --tarballs --index-cache --packages --yes \
@@ -67,8 +63,8 @@ RUN wget --no-hsts --quiet https://github.com/conda-forge/miniforge/releases/dow
 # Create a conda environment from the environment file in the repo root.
 COPY --from=file-normalizer --chown=$USER_UID:conda /data/environment.yml /tmp/build/
 RUN umask 0002 \
-    && /opt/conda/bin/mamba env create -f /tmp/build/environment.yml \
-    && /opt/conda/bin/mamba clean -fy \
+    && /opt/conda/bin/conda env create -f /tmp/build/environment.yml \
+    && /opt/conda/bin/conda clean -fy \
     && sudo chown -R :conda /opt/conda/envs
 
 # Add a file that is to be sourced from .bashrc and from the devops pipeline stages
@@ -91,7 +87,7 @@ RUN mkdir -p /home/vscode/.local/share/CMakeTools \
     && chown vscode:conda /home/vscode/.local/share/CMakeTools/cmake-tools-kits.json
 
 # Install the yardl tool
-ARG YARDL_VERSION=0.3.2
+ARG YARDL_VERSION=0.6.2
 RUN wget --quiet "https://github.com/microsoft/yardl/releases/download/v${YARDL_VERSION}/yardl_${YARDL_VERSION}_linux_x86_64.tar.gz" \
     && tar -xzf "yardl_${YARDL_VERSION}_linux_x86_64.tar.gz" \
     && mv yardl "/opt/conda/envs/${CONDA_ENVIRONMENT_NAME}/bin/" \

.devcontainer/devcontainer.json

@@ -1,5 +1,4 @@
-// For format details, see https://aka.ms/devcontainer.json. For config options, see the README at:
-// https://github.com/microsoft/vscode-dev-containerdevcotns/tree/v0.238.0/containers/go
+// For format details, see https://aka.ms/devcontainer.json.
 {
   "name": "prd",
   "build": {
@@ -115,12 +114,11 @@
     }
   },
 
-  // Use 'forwardPorts' to make a list of ports inside the container available locally.
-  // "forwardPorts": [],
-
-  // Use 'postCreateCommand' to run commands after the container is created.
-  // "postCreateCommand": "go version",
+  "overrideCommand": false,
+  "mounts": [
+    // Bind mount docker socket under an alias to support docker-from-docker
+    "source=/var/run/docker.sock,target=/var/run/docker-host.sock,type=bind"
+  ],
 
-  // Comment out to connect as root instead. More info: https://aka.ms/vscode-remote/containers/non-root.
   "remoteUser": "vscode"
 }

environment.yml

@@ -10,11 +10,12 @@ dependencies:
   - h5py>=3.7.0
   - hdf5>=1.12.1
   - howardhinnant_date>=3.0.1
-  - ipykernel>=6.19.2 
+  - ipykernel>=6.19.2
   - ninja>=1.11.0
   - nlohmann_json>=3.11.2
   - numpy>=1.24.3
   - python>=3.11.3
+  - matplotlib
   - shellcheck>=0.8.0
   - xtensor-fftw>=0.2.5
   - xtensor>=0.24.2