Try adding pandoc to r2u #11
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| # Run CI for R using https://eddelbuettel.github.io/r-ci/ | |
| name: ci | |
| on: | |
| push: | |
| pull_request: | |
| env: | |
| _R_CHECK_FORCE_SUGGESTS_: "false" | |
| jobs: | |
| ci: | |
| strategy: | |
| matrix: | |
| include: | |
| #- {os: macOS-latest} | |
| - {os: ubuntu-latest} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Setup | |
| uses: eddelbuettel/github-actions/r-ci-setup@master | |
| - name: Bootstrap | |
| run: ./run.sh bootstrap | |
| #- name: Dependencies | |
| # run: ./run.sh install_deps | |
| - name: All Dependencies | |
| run: ./run.sh install_all | |
| - name: Create documentation | |
| run: | | |
| R -e " | |
| install.packages(c('rcmdcheck', 'roxygen2', 'devtools')); | |
| file.remove('NAMESPACE'); | |
| descr <- readLines('DESCRIPTION'); | |
| descr <- stringr::str_replace(descr, '^Date.*$', paste('Date:', Sys.Date())); | |
| writeLines(descr, 'DESCRIPTION'); | |
| roxygen2::roxygenise(); | |
| try(devtools::build_manual()) | |
| " | |
| - name: commit | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| git add -f man/\* NAMESPACE | |
| git commit -m 'Documentation' || echo "No changes to commit" | |
| git push origin || echo "No changes to commit" | |
| - name: Deploy | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| R -e " | |
| install.packages(c('rsconnect', 'remotes')); | |
| bspm::disable(); | |
| remotes::install_github('ESHackathon/CiteSource', force = TRUE); | |
| rsconnect::setAccountInfo(name=${{secrets.SHINY_LUKAS_ACCOUNT}}, token=${{secrets.SHINY_LUKAS_TOKEN}}, secret=${{secrets.SHINY_LUKAS_SECRET}}); | |
| rsconnect::deployApp(appName = 'CiteSource_latest', appDir = './inst/shiny-app/CiteSource', forceUpdate = TRUE)" | |
| - name: Deploy release version conditionally | |
| if: github.event_name == 'release' && github.event.release.tag_name != '*test*' | |
| run: | | |
| R -e " | |
| rsconnect::deployApp(appName = 'CiteSource', appDir = './inst/shiny-app/CiteSource', forceUpdate = TRUE)" | |
| - name: Create pkgdown | |
| run: | | |
| R -e " | |
| install.packages('pkgdown'); | |
| pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)" | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/[email protected] | |
| with: | |
| clean: true | |
| branch: gh-pages | |
| folder: docs | |
| - uses: r-lib/actions/check-r-package@v2 |